ENSCING00000003116 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000003116 T35374_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000006317 RRM 3 73
ENSCINP00000006318 RRM 8 78

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCSAVG00000006547 Ciona savignyi ENSCSAVG00000006547 N 0.944
PPIE Gallus gallus ENSGALG00000013383 N 0.859
PPIE Monodelphis domestica ENSMODG00000017659 N 0.859
PPIE Taeniopygia guttata ENSTGUG00000001276 N 0.859
Ppie Mus musculus ENSMUSG00000028651 N 0.845
estExt_fgenesh2_kg.C_sca_1160007 Lottia gigantea estExt_fgenesh2_kg.C_sca_1160007 N 0.845
PPIE Oryctolagus cuniculus ENSOCUG00000007665 N 0.845
PPIE Macaca mulatta ENSMMUG00000018869 N 0.845
Ppie Rattus norvegicus ENSRNOG00000014762 N 0.845
PPIE Sus scrofa ENSSSCG00000003664 N 0.845
PPIE Tursiops truncatus ENSTTRG00000014385 N 0.845
PPIE Sorex araneus ENSSARG00000005703 N 0.845
PPIE Microcebus murinus ENSMICG00000016676 N 0.845
PPIE Pteropus vampyrus ENSPVAG00000002120 N 0.845
PPIE Pan troglodytes ENSPTRG00000000577 N 0.845
PPIE Myotis lucifugus ENSMLUG00000016233 N 0.845
LOC100054282 Equus caballus ENSECAG00000024285 N 0.845
LOC100054084 Equus caballus ENSECAG00000008955 N 0.845
PPIE Dasypus novemcinctus ENSDNOG00000002404 N 0.845
LOC100400545 Callithrix jacchus ENSCJAG00000002589 N 0.845
PPIE Homo sapiens ENSG00000084072 N 0.845
PPIE Canis familiaris ENSCAFG00000003031 N 0.845
PPIE Loxodonta africana ENSLAFG00000028312 N 0.845
AAI23372 Xenopus laevis AAI23372 N 0.845
PPIE Gorilla gorilla ENSGGOG00000015783 N 0.845
PPIE Cavia porcellus ENSCPOG00000007365 N 0.833
ppie Danio rerio ENSDARG00000059270 N 0.831
PPIE Oryzias latipes ENSORLG00000017469 N 0.831
PPIE Ornithorhynchus anatinus ENSOANG00000010003 N 0.831
PPIE Anolis carolinensis ENSACAG00000002688 N 0.831
XP_002168022.1 Hydra magnipapillata XP_002168022.1 N 0.817
Ame_R020475 Ailuropoda melanoleuca Ame_R020475 N 0.817
XP_002154334.1 Hydra magnipapillata XP_002154334.1 N 0.817
XP_799104.2 Strongylocentrotus purpuratus XP_799104.2 N 0.817
XP_001175534.1 Strongylocentrotus purpuratus XP_001175534.1 N 0.817
Q8QGJ6_FUGRU Takifugu rubripes ENSTRUG00000006308 N 0.817
PPIE Tetraodon nigroviridis ENSTNIG00000016901 N 0.817
ENSPPYG00000001501 Pongo pygmaeus ENSPPYG00000001501 N 0.817
ISCW002449 Ixodes scapularis ISCW002449 N 0.817
PPIE Gasterosteus aculeatus ENSGACG00000007165 N 0.817
BGIBMGA003414 Bombyx mori BGIBMGA003414 N 0.803
amel4_ncbi_hmm1701 Apis mellifera amel4_ncbi_hmm1701 N 0.803
amel4_ncbi_hmm1701 Tribolium castaneum amel4_ncbi_hmm1701 N 0.803
PPIE Felis catus ENSFCAG00000006027 N 0.803
estExt_gwp.C_5080019 Branchiostoma floridae estExt_gwp.C_5080019 N 0.803
estExt_gwp.C_2960041 Branchiostoma floridae estExt_gwp.C_2960041 N 0.803
PHUM293600 Pediculus humanus PHUM293600 N 0.789
Aqu1.226474 Amphimedon queenslandica Aqu1.226474 N 0.775
Smp_094810 Schistosoma mansoni Smp_094810 N 0.775
estExt_gwp.C_1130042 Nematostella vectensis estExt_gwp.C_1130042 N 0.761
Bm1_52100 Brugia malayi Bm1_52100 N 0.761
WUBG_08965 Wuchereria bancrofti WUBG_08965 N 0.761
amel4_ncbi_hmm44329 Apis mellifera amel4_ncbi_hmm44329 N 0.761
DGIL_AUG5s585g5t1 Acyrtosiphon pisum DGIL_AUG5s585g5t1 N 0.746
nasonia_NCBI_hmm78483 Nasonia vitripennis nasonia_NCBI_hmm78483 N 0.746
Ppa-cyn-13 Pristionchus pacificus PPA01466 N 0.732
Sjc_0059010 Schistosoma japonicum Sjc_0059010 N 0.732
LOAG_00807 Loa loa LOAG_00807 N 0.732
CBN02296 Caenorhabditis brenneri CBN02296 N 0.718
AGAP009810 Anopheles gambiae AGAP009810 N 0.718
107863 Helobdella robusta 107863 N 0.718
PPIE Macropus eugenii ENSMEUG00000005090 N 0.708
CRE28739 Caenorhabditis remanei CRE28739 N 0.704
PPIE Erinaceus europaeus ENSEEUG00000010232 N 0.704
CAOG_01587 Capsaspora owczarzaki CAOG_01587 N 0.704
PPIE Spermophilus tridecemlineatus ENSSTOG00000010445 N 0.704
AAEL013948 Aedes aegypti AAEL013948 N 0.704