ENSCAFG00000024824 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000024824 T35219_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.886
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.886
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.886
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.871
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000025682 RRM 2 66
ENSCAFP00000025682 RRM 89 158

Links

Other RRM family RBPs
Other Canis familiaris RBPs

227 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.885
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.870
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.864
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.856
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.852
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.852
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.852
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.852
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.852
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.852
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.852
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.852
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.852
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.852
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.852
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.852
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.852
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.852
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.852
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.852
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.852
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.852
HNRNPA1 Homo sapiens ENSG00000135486 D 0.852
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.852
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.852
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.852
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.852
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.852
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.852
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.852
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.852
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.849
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.845
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.845
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.845
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.845
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.845
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.845
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.845
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.845
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.845
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.844
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.838
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.838
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.838
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.838
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.838
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.838
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.838
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.838
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.838
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.838
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.838
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.836
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.836
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.835
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.831
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.831
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.831
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.831
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.831
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.831
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.831
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.831
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.831
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.831
LOC100054206 Equus caballus ENSECAG00000006699 I 0.829
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.829
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.829
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.829
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.824
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.824
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.824
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.820
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.820
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.818
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.817
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.816
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.814
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.814
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.810
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.810
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.810
LOC785445 Bos taurus ENSBTAG00000025621 I 0.810
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.810
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.810
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.807
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.803
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.803
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.803
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.803
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.803
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.801
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.800
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.799
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.796
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.796
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.796
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.796
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.796
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.796
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.794
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.789
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.789
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.789
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.789
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.789
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.787
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.787
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.786
AAH45260 Xenopus laevis AAH45260 I 0.782
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.782
CBU92546 Xenopus laevis CBU92546 I 0.782
AAH72090 Xenopus laevis AAH72090 I 0.782
CBF67672 Xenopus laevis CBF67672 I 0.782
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.776
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.776
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.775
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.775
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.775
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.775
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.775
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.775
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.768
AAA49742 Xenopus laevis AAA49742 I 0.768
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.768
P17130 Xenopus laevis P17130 I 0.768
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.768
AAA49741 Xenopus laevis AAA49741 I 0.768
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.768
CBF67555 Xenopus laevis CBF67555 I 0.768
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.768
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.768
CBU92428 Xenopus laevis CBU92428 I 0.768
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.766
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.764
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.763
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.762
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.762
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.761
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.761
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.761
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.761
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.761
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.761
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.761
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.761
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.758
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.754
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.754
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.754
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.754
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.754
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.754
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.754
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.754
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.753
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.752
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.750
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.750
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.743
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.739
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.739
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.738
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.734
HNRNPA3 Homo sapiens ENSG00000170144 I 0.734
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.734
LOC781499 Bos taurus ENSBTAG00000021580 I 0.734
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.734
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.734
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.734
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.734
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.734
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.734
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.734
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.734
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.734
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.734
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.734
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.734
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.734
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.734
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.734
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.733
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.732
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.732
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.732
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.732
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.732
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.732
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.732
Gm8991 Mus musculus ENSMUSG00000059179 I 0.732
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.732
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.732
P51968 Xenopus laevis P51968 I 0.732
AAA49949 Xenopus laevis AAA49949 I 0.732
LOC100066794 Equus caballus ENSECAG00000023237 I 0.732
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.727
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.727
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.725
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.724
AAI69881 Xenopus laevis AAI69881 I 0.722
AAA49950 Xenopus laevis AAA49950 I 0.722
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.722
CBU92451 Xenopus laevis CBU92451 I 0.722
CBF67578 Xenopus laevis CBF67578 I 0.722
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.722
P51992 Xenopus laevis P51992 I 0.722
ENSCAFG00000006386 Canis familiaris ENSCAFG00000006386 I 0.719
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.719
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.718
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.718
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.718
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.717
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.715
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.715
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.715
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.715
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.715
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.712
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.711
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.710
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.710
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.708
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.706
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.705
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.704