XM_543834.2 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000002157 T34988_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.887
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.887
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.887
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.879
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000019872 RRM 16 85
ENSCAFP00000019872 RRM 107 176

Links

Other RRM family RBPs
Other Canis familiaris RBPs

241 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100054206 Equus caballus ENSECAG00000006699 I 0.871
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.871
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.866
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.866
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.866
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.866
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.866
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.866
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.866
HNRNPA1 Homo sapiens ENSG00000135486 D 0.866
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.866
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.866
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.866
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.866
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.866
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.866
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.866
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.866
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.866
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.866
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.866
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.866
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.866
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.866
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.866
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.866
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.866
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.866
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.866
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.859
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.859
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.859
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.859
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.859
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.859
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.859
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.859
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.859
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.859
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.859
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.852
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.852
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.852
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.852
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.852
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.852
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.852
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.852
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.852
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.851
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.850
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.850
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.850
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.850
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.845
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.845
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.845
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.845
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.845
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.845
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.845
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.843
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.843
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.838
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.838
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.838
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.838
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.838
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.837
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.837
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.837
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.836
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.836
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.832
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.831
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.831
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.829
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.829
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.829
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.829
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.824
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.824
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.824
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.824
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.824
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.824
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.824
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.824
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.821
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.819
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.817
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.817
LOC785445 Bos taurus ENSBTAG00000025621 I 0.817
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.817
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.817
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.814
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.810
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.810
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.810
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.810
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.810
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.810
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.803
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.803
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.803
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.803
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.803
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.803
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.796
AAH72090 Xenopus laevis AAH72090 I 0.796
AAH45260 Xenopus laevis AAH45260 I 0.796
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.796
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.796
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.796
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.796
CBU92546 Xenopus laevis CBU92546 I 0.796
CBF67672 Xenopus laevis CBF67672 I 0.796
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.796
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.794
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.793
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.792
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.789
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.789
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.789
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.787
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.786
P17130 Xenopus laevis P17130 I 0.782
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.782
AAA49742 Xenopus laevis AAA49742 I 0.782
CBU92428 Xenopus laevis CBU92428 I 0.782
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.782
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.782
CBF67555 Xenopus laevis CBF67555 I 0.782
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.782
AAA49741 Xenopus laevis AAA49741 I 0.782
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.779
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.775
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.775
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.775
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.775
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.771
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.768
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.768
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.768
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.768
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.764
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.762
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.761
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.760
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.757
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.754
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.754
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.754
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.750
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.750
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.750
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.748
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.748
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.748
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.748
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.748
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.748
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.748
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.748
HNRNPA3 Homo sapiens ENSG00000170144 I 0.748
LOC781499 Bos taurus ENSBTAG00000021580 I 0.748
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.748
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.748
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.748
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.748
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.748
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.748
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.748
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.748
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.748
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.747
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.746
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.746
AAA49949 Xenopus laevis AAA49949 I 0.746
LOC100066794 Equus caballus ENSECAG00000023237 I 0.746
P51968 Xenopus laevis P51968 I 0.746
Gm8991 Mus musculus ENSMUSG00000059179 I 0.746
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.746
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.746
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.746
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.746
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.746
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.745
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.743
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.743
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.741
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.741
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.740
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.739
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.738
P51992 Xenopus laevis P51992 I 0.736
AAA49950 Xenopus laevis AAA49950 I 0.736
CBF67578 Xenopus laevis CBF67578 I 0.736
AAI69881 Xenopus laevis AAI69881 I 0.736
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.736
CBU92451 Xenopus laevis CBU92451 I 0.736
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.736
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.734
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.733
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.732
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.732
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.732
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.732
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.731
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.730
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.729
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.729
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.729
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.729
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.729
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.725
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.725
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.724
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.724
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.718
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.715
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.715
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.715
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.714
ENSCAFG00000006386 Canis familiaris ENSCAFG00000006386 I 0.714
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.714
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.713
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.712
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.712
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.711
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.708
ENSMODG00000002376 Monodelphis domestica ENSMODG00000002376 I 0.708
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.708
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.706
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.706
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.704
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.703
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.703
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.703
ENSCAFG00000005307 Canis familiaris ENSCAFG00000005307 I 0.701
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.701