pspc1 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000006621 T36044_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000093111 RRM 78 142
ENSDARP00000093111 RRM 152 214

Links

Other RRM family RBPs
Other Danio rerio RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PSPC1 Takifugu rubripes ENSTRUG00000011335 N 0.792
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.786
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.786
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.786
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.785
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.785
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.785
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.785
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.785
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.785
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.785
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.785
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.785
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.785
PSPC1 Homo sapiens ENSG00000121390 I 0.785
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.785
PSPC1 Sorex araneus ENSSARG00000000888 I 0.785
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.785
Pspc1 Mus musculus ENSMUSG00000021938 I 0.785
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.785
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.783
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.777
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.777
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.777
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.777
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.777
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.773
PSPC1 Felis catus ENSFCAG00000013701 I 0.767
PSPC1 Tetraodon nigroviridis ENSTNIG00000010358 N 0.762
PSPC1 Oryzias latipes ENSORLG00000004232 N 0.762
nono Danio rerio ENSDARG00000020482 I 0.760
PSPC1 Gasterosteus aculeatus ENSGACG00000014901 N 0.738
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.733
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 N 0.731
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.725
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.720
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.720
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.718
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.710
PSPC1 Canis familiaris ENSCAFG00000007365 N 0.708
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.707
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.707
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.707
sfpq Danio rerio ENSDARG00000011564 I 0.705
NONO Gasterosteus aculeatus ENSGACG00000011824 I 0.705
NONO Homo sapiens ENSG00000147140 D 0.703
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.702
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.702
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.702
NONO Takifugu rubripes ENSTRUG00000005554 I 0.700
AAH45128 Xenopus laevis AAH45128 I 0.700
BAE54372 Xenopus laevis BAE54372 I 0.700