sfpq (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000011564 T36064_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.812
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.812
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.705
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000020522 RRM 241 305
ENSDARP00000020522 RRM 315 378

Links

Other RRM family RBPs
Other Danio rerio RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.885
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.878
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.835
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.832
SFPQ Procavia capensis ENSPCAG00000006164 I 0.812
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.812
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.812
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.812
Sfpq Mus musculus ENSMUSG00000028820 I 0.812
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.812
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.812
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.812
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.812
SFPQ Bos taurus ENSBTAG00000016328 I 0.812
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.812
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.812
SFPQ Microcebus murinus ENSMICG00000011755 I 0.812
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.812
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.812
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.812
SFPQ Homo sapiens ENSG00000116560 D 0.812
SFPQ Echinops telfairi ENSETEG00000001095 I 0.812
LOC100069588 Equus caballus ENSECAG00000000642 I 0.812
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.812
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.812
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.803
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.803
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.803
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.797
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.797
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.794
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.789
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.789
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.782
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.780
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.765
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.744
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.733
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.733
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.733
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.733
nono Xenopus tropicalis ENSXETG00000020868 I 0.729
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.725
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.725
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.725
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.721
PSPC1 Homo sapiens ENSG00000121390 I 0.715
AAH45128 Xenopus laevis AAH45128 I 0.715
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.715
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.715
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.715
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.715
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.715
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.715
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.715
BAE54372 Xenopus laevis BAE54372 I 0.715
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.715
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.715
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.715
PSPC1 Sorex araneus ENSSARG00000000888 I 0.715
Pspc1 Mus musculus ENSMUSG00000021938 I 0.715
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.715
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.715
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.715
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.715
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.715
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.715
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.715
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.713
NONO Monodelphis domestica ENSMODG00000004445 I 0.712
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.708
NONO Macropus eugenii ENSMEUG00000004294 I 0.707
pspc1 Danio rerio ENSDARG00000006621 N 0.705
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.705
NONO Vicugna pacos ENSVPAG00000002272 I 0.705
NONO Equus caballus ENSECAG00000008502 I 0.705
Nono Rattus norvegicus ENSRNOG00000003689 I 0.705
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.705
NONO Tursiops truncatus ENSTTRG00000009605 I 0.705
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.705
NONO Microcebus murinus ENSMICG00000000232 I 0.705
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.705
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.705
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.705
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.705
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.705
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.705
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.705
NONO Otolemur garnettii ENSOGAG00000004834 I 0.705
NONO Gorilla gorilla ENSGGOG00000006194 I 0.705
NONO Homo sapiens ENSG00000147140 D 0.705
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.705
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.705
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.705
NONO Loxodonta africana ENSLAFG00000013422 I 0.705
Nono Mus musculus ENSMUSG00000031311 I 0.705
NONO Procavia capensis ENSPCAG00000002541 I 0.705