Ame_R014248 (Ailuropoda melanoleuca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Ame_R014248 T55605_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.737
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.737
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R014248 RRM 82 146
Ame_R014248 RRM 156 220

Links

Other RRM family RBPs
Other Ailuropoda melanoleuca RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PSPC1 Monodelphis domestica ENSMODG00000008029 I 1.000
PSPC1 Macaca mulatta ENSMMUG00000020262 I 1.000
PSPC1 Macropus eugenii ENSMEUG00000000476 I 1.000
PSPC1 Loxodonta africana ENSLAFG00000010968 I 1.000
Pspc1 Mus musculus ENSMUSG00000021938 I 1.000
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 1.000
PSPC1 Sorex araneus ENSSARG00000000888 I 1.000
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 1.000
PSPC1 Pan troglodytes ENSPTRG00000005677 I 1.000
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 1.000
PSPC1 Homo sapiens ENSG00000121390 I 1.000
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 1.000
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 1.000
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 1.000
PSPC1 Cavia porcellus ENSCPOG00000000395 I 1.000
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.992
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.992
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.992
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.992
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.992
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.985
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.985
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.977
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.977
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.977
PSPC1 Felis catus ENSFCAG00000013701 I 0.969
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 N 0.938
PSPC1 Canis familiaris ENSCAFG00000007365 N 0.900
pspc1 Danio rerio ENSDARG00000006621 N 0.785
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.779
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.771
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.758
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.758
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.756
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.752
ENSOANG00000011381 Ornithorhynchus anatinus ENSOANG00000011381 N 0.746
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.744
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.744
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.740
PSPC1 Oryzias latipes ENSORLG00000004232 N 0.738
SFPQ Bos taurus ENSBTAG00000016328 I 0.737
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.737
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.737
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.737
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.737
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.737
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.737
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.737
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.737
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.737
SFPQ Procavia capensis ENSPCAG00000006164 I 0.737
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.737
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.737
SFPQ Homo sapiens ENSG00000116560 D 0.737
LOC100069588 Equus caballus ENSECAG00000000642 I 0.737
SFPQ Echinops telfairi ENSETEG00000001095 I 0.737
SFPQ Microcebus murinus ENSMICG00000011755 I 0.737
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.737
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.737
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.737
Sfpq Mus musculus ENSMUSG00000028820 I 0.737
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.737
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.729
nono Danio rerio ENSDARG00000020482 I 0.723
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.722
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.720
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.720
PSPC1 Takifugu rubripes ENSTRUG00000011335 N 0.715
PSPC1 Tetraodon nigroviridis ENSTNIG00000010358 N 0.715
sfpq Danio rerio ENSDARG00000011564 I 0.715
PSPC1 Gasterosteus aculeatus ENSGACG00000014901 N 0.715
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.705