NCL (Oryctolagus cuniculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOCUG00000004312 T39626_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.978
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000021169 RRM 254 322
ENSOCUP00000021169 RRM 340 405
ENSOCUP00000021169 RRM 432 498
ENSOCUP00000021169 RRM 518 585

Links

Other RRM family RBPs
Other Oryctolagus cuniculus RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCL Homo sapiens ENSG00000115053 D 0.978
NCL Gorilla gorilla ENSGGOG00000004300 I 0.978
NCL Macaca mulatta ENSMMUG00000018094 I 0.978
NCL Pan troglodytes ENSPTRG00000013025 I 0.978
NCL Canis familiaris ENSCAFG00000011037 I 0.978
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.974
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.974
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.970
NCL Tarsius syrichta ENSTSYG00000004355 I 0.967
NCL Bos taurus ENSBTAG00000016174 I 0.963
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.963
NCL Tursiops truncatus ENSTTRG00000009094 I 0.963
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.948
NCL Microcebus murinus ENSMICG00000002538 I 0.948
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.922
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.922
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.919
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.893
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.893
Ncl Mus musculus ENSMUSG00000026234 I 0.885
NCL Cavia porcellus ENSCPOG00000001034 I 0.874
Ncl Dipodomys ordii ENSDORG00000012513 I 0.863
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.856
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.844
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.822
NCL Vicugna pacos ENSVPAG00000001796 I 0.819
NCL Loxodonta africana ENSLAFG00000013061 I 0.819
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.812
NCL Macropus eugenii ENSMEUG00000012335 I 0.808
NCL Monodelphis domestica ENSMODG00000002470 I 0.804
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.804
NCL Choloepus hoffmanni ENSCHOG00000012860 I 0.748
NCL Sorex araneus ENSSARG00000010007 I 0.733
ENSGGOG00000022986 Gorilla gorilla ENSGGOG00000022986 I 0.707
NUCL_CHICK Gallus gallus ENSGALG00000007705 I 0.705