CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NCL
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000004312
T39626_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
NCL
M245_0.6
Homo sapiens
CCGAAAKCCCGAAGYAGG
SELEX
Cook et al.(2011)
1004_8676391
0.978
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000021169
RRM
254
322
LFVGNLNSSKSAPELKTGISDVFAKNDLAVVDVRIGTTRKFGYVDFESAEDLEKALELTGLKVFGNEIK
ENSOCUP00000021169
RRM
340
405
LLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSVS
ENSOCUP00000021169
RRM
432
498
LVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR
ENSOCUP00000021169
RRM
518
585
LFVKGLSEETTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NCL
Homo sapiens
ENSG00000115053
D
0.978
NCL
Gorilla gorilla
ENSGGOG00000004300
I
0.978
NCL
Macaca mulatta
ENSMMUG00000018094
I
0.978
NCL
Pan troglodytes
ENSPTRG00000013025
I
0.978
NCL
Canis familiaris
ENSCAFG00000011037
I
0.978
LOC100395223
Callithrix jacchus
ENSCJAG00000013538
I
0.974
NCL
Pteropus vampyrus
ENSPVAG00000000297
I
0.974
Ame_R005385
Ailuropoda melanoleuca
Ame_R005385
I
0.970
NCL
Tarsius syrichta
ENSTSYG00000004355
I
0.967
NCL
Bos taurus
ENSBTAG00000016174
I
0.963
Q6X9Z0_HORSE
Equus caballus
ENSECAG00000021868
I
0.963
NCL
Tursiops truncatus
ENSTTRG00000009094
I
0.963
ENSBTAG00000026909
Bos taurus
ENSBTAG00000026909
I
0.948
NCL
Microcebus murinus
ENSMICG00000002538
I
0.948
ENSETEG00000018937
Echinops telfairi
ENSETEG00000018937
I
0.922
ENSETEG00000014756
Echinops telfairi
ENSETEG00000014756
I
0.922
NCL
Erinaceus europaeus
ENSEEUG00000005913
I
0.919
ENSRNOG00000008664
Rattus norvegicus
ENSRNOG00000008664
I
0.893
Ncl
Rattus norvegicus
ENSRNOG00000018273
I
0.893
Ncl
Mus musculus
ENSMUSG00000026234
I
0.885
NCL
Cavia porcellus
ENSCPOG00000001034
I
0.874
Ncl
Dipodomys ordii
ENSDORG00000012513
I
0.863
ENSPPYG00000013265
Pongo pygmaeus
ENSPPYG00000013265
I
0.856
ENSSSCG00000016275
Sus scrofa
ENSSSCG00000016275
I
0.844
ENSTBEG00000001546
Tupaia belangeri
ENSTBEG00000001546
I
0.822
NCL
Vicugna pacos
ENSVPAG00000001796
I
0.819
NCL
Loxodonta africana
ENSLAFG00000013061
I
0.819
NCL
Ornithorhynchus anatinus
ENSOANG00000008732
I
0.812
NCL
Macropus eugenii
ENSMEUG00000012335
I
0.808
NCL
Monodelphis domestica
ENSMODG00000002470
I
0.804
ENSTBEG00000002469
Tupaia belangeri
ENSTBEG00000002469
I
0.804
NCL
Choloepus hoffmanni
ENSCHOG00000012860
I
0.748
NCL
Sorex araneus
ENSSARG00000010007
I
0.733
ENSGGOG00000022986
Gorilla gorilla
ENSGGOG00000022986
I
0.707
NUCL_CHICK
Gallus gallus
ENSGALG00000007705
I
0.705