D4ACP9_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000021929 T41147_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.764
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.764
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.764
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.743
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000002123 RRM 15 83
ENSRNOP00000002123 RRM 104 174

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

61 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.780
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.778
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.773
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.773
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.762
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.752
Gm8991 Mus musculus ENSMUSG00000059179 I 0.752
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.747
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.746
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.745
LOC100066794 Equus caballus ENSECAG00000023237 I 0.745
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.745
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.745
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.741
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.740
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.740
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.740
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.740
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.740
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.740
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.740
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.740
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.740
HNRNPA3 Homo sapiens ENSG00000170144 I 0.740
LOC781499 Bos taurus ENSBTAG00000021580 I 0.740
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.740
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.740
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.740
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.740
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.740
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.740
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.740
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.738
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.738
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.738
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.738
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.738
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.734
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.733
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.732
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.732
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.732
P51968 Xenopus laevis P51968 I 0.725
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.725
AAA49949 Xenopus laevis AAA49949 I 0.725
P51992 Xenopus laevis P51992 I 0.722
AAA49950 Xenopus laevis AAA49950 I 0.722
CBU92451 Xenopus laevis CBU92451 I 0.722
AAI69881 Xenopus laevis AAI69881 I 0.722
CBF67578 Xenopus laevis CBF67578 I 0.722
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.720
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.718
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.716
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.715
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.713
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.713
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.713
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.707
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.705
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.703
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.703