ENSPPYG00000012967 (Pongo pygmaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPPYG00000012967 T40536_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.830
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.830
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.830
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.816
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000014482 RRM 37 106
ENSPPYP00000014482 RRM 128 196
ENSPPYP00000014483 RRM 14 83
ENSPPYP00000014483 RRM 105 161

Links

Other RRM family RBPs
Other Pongo pygmaeus RBPs

261 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.977
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.962
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.950
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.950
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.950
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.950
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.950
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.950
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.950
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.950
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.950
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.950
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.950
HNRNPA3 Homo sapiens ENSG00000170144 I 0.950
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.950
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.950
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.950
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.950
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.950
LOC781499 Bos taurus ENSBTAG00000021580 I 0.950
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.943
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.943
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.934
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.929
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.929
LOC100066794 Equus caballus ENSECAG00000023237 I 0.929
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.927
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.925
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.922
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.922
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.922
Gm8991 Mus musculus ENSMUSG00000059179 I 0.922
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.915
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.894
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.894
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.887
P51968 Xenopus laevis P51968 I 0.887
AAA49949 Xenopus laevis AAA49949 I 0.887
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.885
CBU92451 Xenopus laevis CBU92451 I 0.874
AAA49950 Xenopus laevis AAA49950 I 0.874
CBF67578 Xenopus laevis CBF67578 I 0.874
AAI69881 Xenopus laevis AAI69881 I 0.874
P51992 Xenopus laevis P51992 I 0.874
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.867
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.866
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.865
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.855
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.855
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.844
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.842
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.839
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.837
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.837
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.830
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.830
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.830
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.830
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.830
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.830
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.830
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.830
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.830
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.830
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.830
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.830
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.830
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.830
HNRNPA1 Homo sapiens ENSG00000135486 D 0.830
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.830
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.830
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.830
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.830
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.830
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.830
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.830
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.830
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.830
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.830
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.830
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.830
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.830
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.830
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.830
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.830
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.823
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.823
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.823
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.823
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.823
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.823
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.816
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.816
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.816
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.816
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.816
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.816
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.816
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.816
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.816
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.816
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.816
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.809
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.809
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.809
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.809
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.809
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.809
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.809
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.809
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.809
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.801
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.801
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.801
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.801
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.801
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.800
LOC785445 Bos taurus ENSBTAG00000025621 I 0.796
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.794
CBF67555 Xenopus laevis CBF67555 I 0.794
AAH45260 Xenopus laevis AAH45260 I 0.794
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.794
CBF67672 Xenopus laevis CBF67672 I 0.794
AAA49742 Xenopus laevis AAA49742 I 0.794
AAA49741 Xenopus laevis AAA49741 I 0.794
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.794
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.794
CBU92428 Xenopus laevis CBU92428 I 0.794
AAH72090 Xenopus laevis AAH72090 I 0.794
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.794
P17130 Xenopus laevis P17130 I 0.794
CBU92546 Xenopus laevis CBU92546 I 0.794
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.787
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.787
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.787
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.787
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.787
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.786
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.783
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.782
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.780
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.776
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.775
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.775
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.773
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.773
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.773
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.770
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.769
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.769
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.768
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.768
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.768
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.768
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.766
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.766
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.762
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.761
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.761
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.758
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.755
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.755
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.754
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.754
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.754
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.754
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.754
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.752
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.750
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.748
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.748
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.746
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.745
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.743
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.742
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.741
LOC100054206 Equus caballus ENSECAG00000006699 I 0.741
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.741
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.739
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.739
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.739
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.739
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.739
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.739
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.738
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.735
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.734
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.732
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.732
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.732
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.730
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.730
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.730
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.729
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.729
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.728
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.727
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.725
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.725
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.725
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.725
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.725
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.725
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.725
zgc:66127 Danio rerio ENSDARG00000011020 I 0.723
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.723
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.720
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.720
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.720
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.720
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.718
D3ZHS1_RAT Rattus norvegicus ENSRNOG00000017364 N 0.717
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.716
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.713
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.713
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.713
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.713
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.711
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.711
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.711
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.709
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.709
HNRNPA3 Erinaceus europaeus ENSEEUG00000006347 N 0.709
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.709
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.708
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.706
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.706
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.705
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.705
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.705
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.705
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.705
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.705
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.705
LOC100068539 Equus caballus ENSECAG00000000782 I 0.705
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.705
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.705
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.705
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.705
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.705
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.705
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.705
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.705
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.705
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.705
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.705
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.705
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.705
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.705
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.705
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.705
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.705
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.705
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.705
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.705
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.705
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.705
HNRNPA3 Canis familiaris ENSCAFG00000015889 I 0.704
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.701
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.701