ENSRNOG00000030901 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000030901 T41209_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.769
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.769
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.769
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.748
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000042522 RRM 38 107
ENSRNOP00000042522 RRM 129 196
ENSRNOP00000044780 RRM 38 107
ENSRNOP00000044780 RRM 129 196

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

194 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Gm8991 Mus musculus ENSMUSG00000059179 I 0.893
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.887
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.886
LOC100066794 Equus caballus ENSECAG00000023237 I 0.886
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.886
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.879
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.879
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.879
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.879
LOC781499 Bos taurus ENSBTAG00000021580 I 0.879
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.879
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.879
HNRNPA3 Homo sapiens ENSG00000170144 I 0.879
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.879
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.879
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.879
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.879
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.879
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.879
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.879
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.879
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.879
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.879
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.879
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.879
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.879
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.872
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.871
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.864
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.851
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.850
P51968 Xenopus laevis P51968 I 0.843
AAA49949 Xenopus laevis AAA49949 I 0.843
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.837
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.837
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.836
P51992 Xenopus laevis P51992 I 0.831
CBF67578 Xenopus laevis CBF67578 I 0.831
AAA49950 Xenopus laevis AAA49950 I 0.831
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.831
CBU92451 Xenopus laevis CBU92451 I 0.831
AAI69881 Xenopus laevis AAI69881 I 0.831
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.830
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.821
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.809
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.809
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.803
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.801
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.800
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.800
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.800
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.800
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.800
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.794
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.793
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.793
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.793
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.793
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.793
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.793
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.793
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.793
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.793
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.793
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.793
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.793
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.793
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.793
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.793
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.793
HNRNPA1 Homo sapiens ENSG00000135486 D 0.793
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.793
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.793
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.793
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.793
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.793
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.793
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.793
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.793
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.793
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.786
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.786
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.786
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.786
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.786
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.786
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.786
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.786
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.786
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.786
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.786
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.786
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.786
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.780
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.779
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.779
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.779
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.779
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.779
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.779
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.779
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.771
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.771
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.771
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.771
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.771
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.771
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.771
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.771
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.771
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.766
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.764
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.764
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.764
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.764
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.764
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.759
AAH45260 Xenopus laevis AAH45260 I 0.757
CBU92546 Xenopus laevis CBU92546 I 0.757
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.757
AAH72090 Xenopus laevis AAH72090 I 0.757
CBF67672 Xenopus laevis CBF67672 I 0.757
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.757
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.757
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.757
LOC785445 Bos taurus ENSBTAG00000025621 I 0.752
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.750
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.750
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.750
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.750
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.750
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.745
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.745
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.745
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.745
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.743
AAA49741 Xenopus laevis AAA49741 I 0.743
AAA49742 Xenopus laevis AAA49742 I 0.743
CBU92428 Xenopus laevis CBU92428 I 0.743
CBF67555 Xenopus laevis CBF67555 I 0.743
P17130 Xenopus laevis P17130 I 0.743
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.740
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.739
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.739
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.739
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.738
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.738
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.736
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.736
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.732
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.732
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.730
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.730
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.730
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.730
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.730
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.725
LOC100054206 Equus caballus ENSECAG00000006699 I 0.725
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.723
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.723
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.723
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.723
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.723
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.721
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.721
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.718
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.718
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.718
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.716
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.716
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.716
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.716
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.716
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.716
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.714
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.714
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.713
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.711
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.709
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.709
zgc:66127 Danio rerio ENSDARG00000011020 I 0.707
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.707
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.706
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.705
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.704
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.704
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.702
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.702
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.702