CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSRNOG00000027820
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000027820
T41187_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PTBP1
M303_0.6
Homo sapiens
Sequence logo not available
UCUU
SELEX
Cook et al.(2011)
46_9214659
0.786
PTBP1
M228_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00269
0.786
PTBP1
M227_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00268
0.786
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000053780
RRM
55
111
IHVLKLHSDVTEGEIISLGLSFGKATNLLMLKRKNQAFIEMSTVEAANTMVSYYTSV
ENSRNOP00000053780
RRM
179
240
IIVGNLFYPVTLDVLHKIFSKFGRVLKIITFTKNALLQSADPVSAQHAKLSDGQNICNARCM
ENSRNOP00000053780
RRM
312
377
VLVSNLNLERVTTQSLFILLGVYGDMQQVKILFNKENALVQSTDGSQAQLAISHLNRHKLHGTSVH
ENSRNOP00000053780
RRM
428
492
LHLSNIPPSVSEDDFKSLFSSNGGMVKGFKFFKKDHKMILIQMGPVEEAVPALIELYNHDLEGNH
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ptbp1
Rattus norvegicus
ENSRNOG00000010448
I
0.818
Ptbp1
Mus musculus
ENSMUSG00000006498
I
0.814
PTBP1
Canis familiaris
ENSCAFG00000019693
I
0.795
PTBP1
Sus scrofa
ENSSSCG00000013421
I
0.791
ENSPPYG00000009289
Pongo pygmaeus
ENSPPYG00000009289
I
0.787
PTBP1
Homo sapiens
ENSG00000011304
D
0.787
PTBP1
Cavia porcellus
ENSCPOG00000025512
I
0.787
XR_025154.1
Pan troglodytes
ENSPTRG00000010165
I
0.787
PTBP1
Tursiops truncatus
ENSTTRG00000003439
I
0.787
PTBP1
Pteropus vampyrus
ENSPVAG00000008288
I
0.787
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.779
PTBP1
Equus caballus
ENSECAG00000018845
I
0.779
PTBP1
Meleagris gallopavo
ENSMGAG00000003503
I
0.764
Q5F456_CHICK
Gallus gallus
ENSGALG00000001962
I
0.764
PTBP1
Macropus eugenii
ENSMEUG00000006710
I
0.759
PTBP1
Monodelphis domestica
ENSMODG00000006302
I
0.759
PTBP1
Taeniopygia guttata
ENSTGUG00000000641
I
0.756
PTBP1
Loxodonta africana
ENSLAFG00000027110
I
0.755
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.752
PTBP1
Ornithorhynchus anatinus
ENSOANG00000009191
I
0.752
ENSMLUG00000003320
Myotis lucifugus
ENSMLUG00000003320
I
0.736
Ptbp1
Dipodomys ordii
ENSDORG00000002835
I
0.733
AAF00041
Xenopus laevis
AAF00041
I
0.726
ENSETEG00000006890
Echinops telfairi
ENSETEG00000006890
I
0.721
AAH45068
Xenopus laevis
AAH45068
I
0.718