ENSETEG00000006890 (Echinops telfairi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSETEG00000006890 T36913_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.867
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.867
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.867
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000005587 RRM 22 77
ENSETEP00000005587 RRM 147 213
ENSETEP00000005587 RRM 337 390
ENSETEP00000005587 RRM 441 505

Links

Other RRM family RBPs
Other Echinops telfairi RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.891
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.891
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.887
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.886
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.883
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.882
PTBP1 Equus caballus ENSECAG00000018845 I 0.879
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.878
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.875
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.867
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.867
PTBP1 Homo sapiens ENSG00000011304 D 0.867
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.859
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.855
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.855
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.848
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.848
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.844
AAH97557 Xenopus laevis AAH97557 I 0.844
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.840
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.835
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.820
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.816
AAH45068 Xenopus laevis AAH45068 I 0.813
AAF00041 Xenopus laevis AAF00041 I 0.812
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.804
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.788
ptbp1a Danio rerio ENSDARG00000019362 I 0.767
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.763
ptbp1b Danio rerio ENSDARG00000031907 I 0.758
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.758
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.755
Rod1 Mus musculus ENSMUSG00000028382 I 0.746
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.746
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.746
ROD1 Sus scrofa ENSSSCG00000005466 I 0.745
ROD1 Danio rerio ENSDARG00000043757 I 0.745
ROD1 Equus caballus ENSECAG00000021243 I 0.745
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.742
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.742
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.742
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.742
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.738
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.738
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.738
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.738
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.738
ROD1 Homo sapiens ENSG00000119314 I 0.738
ROD1 Bos taurus ENSBTAG00000016750 I 0.737
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.734
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.727
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.727
ENSRNOG00000027820 Rattus norvegicus ENSRNOG00000027820 I 0.721
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.720
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.712
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.712
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.712
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.708
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.708
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.708
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.708
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.708
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.708
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.708
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.708
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.708
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.708
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.708
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.708
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.708
PTBP2 Homo sapiens ENSG00000117569 I 0.708
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.708
ROD1 Canis familiaris ENSCAFG00000003015 I 0.707
LOC100057336 Equus caballus ENSECAG00000015783 I 0.705
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.704
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.703
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.700