CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTBP1
(
Loxodonta africana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSLAFG00000027110
T38118_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PTBP1
M227_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00268
0.898
PTBP1
M303_0.6
Homo sapiens
Sequence logo not available
UCUU
SELEX
Cook et al.(2011)
46_9214659
0.898
PTBP1
M228_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00269
0.898
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000025203
RRM
61
116
VHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS
ENSLAFP00000025203
RRM
186
251
IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVSAQHAKLSLDGQNIYACCT
ENSLAFP00000025203
RRM
362
421
KTRVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVR
ENSLAFP00000025203
RRM
472
536
LHLSNIPPSISEDDLKILFSSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQALIELHNHDLGENH
Links
Other
RRM
family RBPs
Other
Loxodonta africana
RBPs
82 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTBP1
Pteropus vampyrus
ENSPVAG00000008288
I
0.926
PTBP1
Sus scrofa
ENSSSCG00000013421
I
0.922
PTBP1
Canis familiaris
ENSCAFG00000019693
I
0.918
PTBP1
Tursiops truncatus
ENSTTRG00000003439
I
0.918
PTBP1
Equus caballus
ENSECAG00000018845
I
0.910
Ptbp1
Mus musculus
ENSMUSG00000006498
I
0.906
Ptbp1
Rattus norvegicus
ENSRNOG00000010448
I
0.902
XR_025154.1
Pan troglodytes
ENSPTRG00000010165
I
0.898
ENSPPYG00000009289
Pongo pygmaeus
ENSPPYG00000009289
I
0.898
PTBP1
Cavia porcellus
ENSCPOG00000025512
I
0.898
PTBP1
Homo sapiens
ENSG00000011304
D
0.898
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.891
ENSETEG00000006890
Echinops telfairi
ENSETEG00000006890
I
0.886
PTBP1
Meleagris gallopavo
ENSMGAG00000003503
I
0.883
Q5F456_CHICK
Gallus gallus
ENSGALG00000001962
I
0.883
PTBP1
Ornithorhynchus anatinus
ENSOANG00000009191
I
0.875
PTBP1
Macropus eugenii
ENSMEUG00000006710
I
0.875
PTBP1
Monodelphis domestica
ENSMODG00000006302
I
0.875
PTBP1
Taeniopygia guttata
ENSTGUG00000000641
I
0.867
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.863
ENSMLUG00000003320
Myotis lucifugus
ENSMLUG00000003320
I
0.863
Ptbp1
Dipodomys ordii
ENSDORG00000002835
I
0.836
AAF00041
Xenopus laevis
AAF00041
I
0.829
AAH45068
Xenopus laevis
AAH45068
I
0.825
PTBP1
Procavia capensis
ENSPCAG00000007614
I
0.816
AAH97557
Xenopus laevis
AAH97557
I
0.806
ptbp1
Xenopus tropicalis
ENSXETG00000021661
I
0.777
ptbp1a
Danio rerio
ENSDARG00000019362
I
0.774
PTBP1
Gasterosteus aculeatus
ENSGACG00000011048
I
0.767
ptbp1b
Danio rerio
ENSDARG00000031907
I
0.766
ROD1
Sus scrofa
ENSSSCG00000005466
I
0.765
ROD1
Equus caballus
ENSECAG00000021243
I
0.765
PTBP1
Oryzias latipes
ENSORLG00000014019
I
0.762
PTBP1
Oryzias latipes
ENSORLG00000011430
I
0.762
PTBP1
Takifugu rubripes
ENSTRUG00000011360
I
0.759
Rod1
Mus musculus
ENSMUSG00000028382
I
0.758
Rod1
Rattus norvegicus
ENSRNOG00000016334
I
0.758
ENSRNOG00000027820
Rattus norvegicus
ENSRNOG00000027820
I
0.755
rod1
Xenopus tropicalis
ENSXETG00000002225
I
0.754
ROD1
Cavia porcellus
ENSCPOG00000011586
I
0.754
ROD1
Oryctolagus cuniculus
ENSOCUG00000017670
I
0.754
ROD1
Bos taurus
ENSBTAG00000016750
I
0.753
ROD1
Danio rerio
ENSDARG00000043757
I
0.750
ROD1
Monodelphis domestica
ENSMODG00000005502
I
0.750
ENSPPYG00000019504
Pongo pygmaeus
ENSPPYG00000019504
I
0.750
ROD1
Macaca mulatta
ENSMMUG00000000464
I
0.750
ROD1
Homo sapiens
ENSG00000119314
I
0.750
ROD1
Gorilla gorilla
ENSGGOG00000001755
I
0.750
ROD1
Pan troglodytes
ENSPTRG00000021263
I
0.750
ROD1
Loxodonta africana
ENSLAFG00000011358
I
0.746
ROD1
Anolis carolinensis
ENSACAG00000017316
I
0.746
PTBP1
Takifugu rubripes
ENSTRUG00000010168
I
0.739
ROD1
Callithrix jacchus
ENSCJAG00000017686
I
0.738
PTBP2
Anolis carolinensis
ENSACAG00000005600
I
0.735
PTBP2
Loxodonta africana
ENSLAFG00000017343
I
0.728
Q9YI60_CHICK
Gallus gallus
ENSGALG00000005552
I
0.728
PTBP2
Meleagris gallopavo
ENSMGAG00000007308
I
0.728
Ptbp2
Mus musculus
ENSMUSG00000028134
I
0.724
PTBP2
Homo sapiens
ENSG00000117569
I
0.724
PTBP2
Gorilla gorilla
ENSGGOG00000000659
I
0.724
PTBP2
Macaca mulatta
ENSMMUG00000016130
I
0.724
PTBP2
Oryctolagus cuniculus
ENSOCUG00000017608
I
0.724
PTBP2
Tursiops truncatus
ENSTTRG00000012904
I
0.724
ENSPPYG00000001132
Pongo pygmaeus
ENSPPYG00000001132
I
0.724
Ptbp2
Rattus norvegicus
ENSRNOG00000010827
I
0.724
Ame_R002925
Ailuropoda melanoleuca
Ame_R002925
I
0.724
PTBP2
Vicugna pacos
ENSVPAG00000002841
I
0.724
PTBP2
Tarsius syrichta
ENSTSYG00000002576
I
0.724
PTBP2
Ornithorhynchus anatinus
ENSOANG00000004656
I
0.724
PTBP2
Cavia porcellus
ENSCPOG00000003762
I
0.724
PTBP2
Canis familiaris
ENSCAFG00000020080
I
0.724
PTBP2
Pan troglodytes
ENSPTRG00000000987
I
0.724
ROD1
Canis familiaris
ENSCAFG00000003015
I
0.723
LOC100057336
Equus caballus
ENSECAG00000015783
I
0.721
PTBP2
Monodelphis domestica
ENSMODG00000004211
I
0.720
PTBP2
Taeniopygia guttata
ENSTGUG00000005558
I
0.716
PTBP2
Myotis lucifugus
ENSMLUG00000002522
I
0.716
PTBP2
Microcebus murinus
ENSMICG00000008543
I
0.715
PTBP2
Oryzias latipes
ENSORLG00000013557
I
0.714
PTBP2
Gasterosteus aculeatus
ENSGACG00000014892
I
0.707
PTBP2
Danio rerio
ENSDARG00000015901
I
0.704
PTBP2
Tetraodon nigroviridis
ENSTNIG00000018950
I
0.703