CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMLUG00000003320
(
Myotis lucifugus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMLUG00000003320
T38639_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PTBP1
M227_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00268
0.906
PTBP1
M303_0.6
Homo sapiens
Sequence logo not available
UCUU
SELEX
Cook et al.(2011)
46_9214659
0.906
PTBP1
M228_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00269
0.906
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMLUP00000003020
RRM
61
117
IHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV
ENSMLUP00000003020
RRM
197
249
FPQIFSKFGTVLKIITFTKNNQFQALLQYAEPVSAQHAKLSLDGQNIYNACCT
ENSMLUP00000003020
RRM
362
428
LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVR
ENSMLUP00000003020
RRM
479
543
LHLSNIPPSVSEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENH
Links
Other
RRM
family RBPs
Other
Myotis lucifugus
RBPs
81 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTBP1
Canis familiaris
ENSCAFG00000019693
I
0.930
PTBP1
Pteropus vampyrus
ENSPVAG00000008288
I
0.930
PTBP1
Sus scrofa
ENSSSCG00000013421
I
0.926
PTBP1
Tursiops truncatus
ENSTTRG00000003439
I
0.922
PTBP1
Equus caballus
ENSECAG00000018845
I
0.914
Ptbp1
Mus musculus
ENSMUSG00000006498
I
0.910
ENSPPYG00000009289
Pongo pygmaeus
ENSPPYG00000009289
I
0.906
PTBP1
Homo sapiens
ENSG00000011304
D
0.906
XR_025154.1
Pan troglodytes
ENSPTRG00000010165
I
0.906
Ptbp1
Rattus norvegicus
ENSRNOG00000010448
I
0.906
PTBP1
Cavia porcellus
ENSCPOG00000025512
I
0.902
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.898
Q5F456_CHICK
Gallus gallus
ENSGALG00000001962
I
0.879
PTBP1
Meleagris gallopavo
ENSMGAG00000003503
I
0.879
PTBP1
Taeniopygia guttata
ENSTGUG00000000641
I
0.867
PTBP1
Ornithorhynchus anatinus
ENSOANG00000009191
I
0.864
PTBP1
Macropus eugenii
ENSMEUG00000006710
I
0.863
PTBP1
Loxodonta africana
ENSLAFG00000027110
I
0.863
PTBP1
Monodelphis domestica
ENSMODG00000006302
I
0.863
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.855
Ptbp1
Dipodomys ordii
ENSDORG00000002835
I
0.840
AAF00041
Xenopus laevis
AAF00041
I
0.836
ENSETEG00000006890
Echinops telfairi
ENSETEG00000006890
I
0.835
AAH45068
Xenopus laevis
AAH45068
I
0.829
PTBP1
Procavia capensis
ENSPCAG00000007614
I
0.800
ptbp1a
Danio rerio
ENSDARG00000019362
I
0.782
ptbp1
Xenopus tropicalis
ENSXETG00000021661
I
0.774
PTBP1
Oryzias latipes
ENSORLG00000014019
I
0.773
AAH97557
Xenopus laevis
AAH97557
I
0.766
ptbp1b
Danio rerio
ENSDARG00000031907
I
0.766
PTBP1
Gasterosteus aculeatus
ENSGACG00000011048
I
0.763
ROD1
Sus scrofa
ENSSSCG00000005466
I
0.761
ROD1
Equus caballus
ENSECAG00000021243
I
0.761
PTBP1
Takifugu rubripes
ENSTRUG00000011360
I
0.759
PTBP1
Oryzias latipes
ENSORLG00000011430
I
0.758
Rod1
Rattus norvegicus
ENSRNOG00000016334
I
0.754
PTBP1
Takifugu rubripes
ENSTRUG00000010168
I
0.754
Rod1
Mus musculus
ENSMUSG00000028382
I
0.754
ROD1
Danio rerio
ENSDARG00000043757
I
0.753
PTBP2
Anolis carolinensis
ENSACAG00000005600
I
0.751
ROD1
Oryctolagus cuniculus
ENSOCUG00000017670
I
0.750
rod1
Xenopus tropicalis
ENSXETG00000002225
I
0.750
ROD1
Cavia porcellus
ENSCPOG00000011586
I
0.750
ROD1
Anolis carolinensis
ENSACAG00000017316
I
0.750
ROD1
Monodelphis domestica
ENSMODG00000005502
I
0.750
ROD1
Bos taurus
ENSBTAG00000016750
I
0.749
ROD1
Homo sapiens
ENSG00000119314
I
0.746
ENSPPYG00000019504
Pongo pygmaeus
ENSPPYG00000019504
I
0.746
ROD1
Pan troglodytes
ENSPTRG00000021263
I
0.746
ROD1
Macaca mulatta
ENSMMUG00000000464
I
0.746
ROD1
Gorilla gorilla
ENSGGOG00000001755
I
0.746
PTBP2
Loxodonta africana
ENSLAFG00000017343
I
0.743
Q9YI60_CHICK
Gallus gallus
ENSGALG00000005552
I
0.743
PTBP2
Meleagris gallopavo
ENSMGAG00000007308
I
0.743
ROD1
Loxodonta africana
ENSLAFG00000011358
I
0.742
PTBP2
Macaca mulatta
ENSMMUG00000016130
I
0.739
PTBP2
Oryctolagus cuniculus
ENSOCUG00000017608
I
0.739
PTBP2
Ornithorhynchus anatinus
ENSOANG00000004656
I
0.739
PTBP2
Gorilla gorilla
ENSGGOG00000000659
I
0.739
Ptbp2
Mus musculus
ENSMUSG00000028134
I
0.739
PTBP2
Homo sapiens
ENSG00000117569
I
0.739
PTBP2
Cavia porcellus
ENSCPOG00000003762
I
0.739
PTBP2
Vicugna pacos
ENSVPAG00000002841
I
0.739
Ame_R002925
Ailuropoda melanoleuca
Ame_R002925
I
0.739
PTBP2
Tursiops truncatus
ENSTTRG00000012904
I
0.739
PTBP2
Tarsius syrichta
ENSTSYG00000002576
I
0.739
Ptbp2
Rattus norvegicus
ENSRNOG00000010827
I
0.739
ENSPPYG00000001132
Pongo pygmaeus
ENSPPYG00000001132
I
0.739
PTBP2
Pan troglodytes
ENSPTRG00000000987
I
0.739
PTBP2
Canis familiaris
ENSCAFG00000020080
I
0.739
LOC100057336
Equus caballus
ENSECAG00000015783
I
0.736
ENSRNOG00000027820
Rattus norvegicus
ENSRNOG00000027820
I
0.736
PTBP2
Monodelphis domestica
ENSMODG00000004211
I
0.735
PTBP2
Myotis lucifugus
ENSMLUG00000002522
I
0.734
ROD1
Callithrix jacchus
ENSCJAG00000017686
I
0.734
PTBP2
Taeniopygia guttata
ENSTGUG00000005558
I
0.732
ROD1
Canis familiaris
ENSCAFG00000003015
I
0.719
PTBP2
Oryzias latipes
ENSORLG00000013557
I
0.715
PTBP2
Tetraodon nigroviridis
ENSTNIG00000018950
I
0.714
PTBP2
Danio rerio
ENSDARG00000015901
I
0.713
PTBP2
Gasterosteus aculeatus
ENSGACG00000014892
I
0.700