RBMS1 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000009477 T42070_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBMS1
M143_0.6 		Homo sapiens KAUAUAS RNAcompete
Ray et al.(2013)
RNCMPT00152 		0.793
RBMS3
M164_0.6 		Homo sapiens HAUAUA RNAcompete
Ray et al.(2013)
RNCMPT00173 		0.719
RBMS3
M055_0.6 		Homo sapiens MUAUAKM RNAcompete
Ray et al.(2013)
RNCMPT00057 		0.719
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000002260 RRM 31 98
ENSTNIP00000002260 RRM 110 174
ENSTNIP00000012349 RRM 10 77
ENSTNIP00000012349 RRM 89 153

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

99 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBMS1 Takifugu rubripes ENSTRUG00000017155 I 0.992
RBMS1 Gasterosteus aculeatus ENSGACG00000015174 I 0.948
RBMS1 Oryzias latipes ENSORLG00000003917 I 0.926
RBMS1 Oryzias latipes ENSORLG00000016818 I 0.821
ENSPPYG00000012879 Pongo pygmaeus ENSPPYG00000012879 I 0.807
AAH43623 Xenopus laevis AAH43623 I 0.806
RBMS1 Spermophilus tridecemlineatus ENSSTOG00000012501 I 0.806
RBMS1 Gorilla gorilla ENSGGOG00000001264 I 0.800
RBMS1 Canis familiaris ENSCAFG00000009922 I 0.800
RBMS1 Macaca mulatta ENSMMUG00000016825 I 0.800
RBMS1 Ornithorhynchus anatinus ENSOANG00000006166 I 0.800
RBMS1 Pteropus vampyrus ENSPVAG00000010429 I 0.800
A6ML07_CALJA Callithrix jacchus ENSCJAG00000014861 I 0.800
Rbms1 Dipodomys ordii ENSDORG00000007103 I 0.800
RBMS1 Sus scrofa ENSSSCG00000015888 I 0.800
RBMS1 Homo sapiens ENSG00000153250 D 0.800
RBMS1 Monodelphis domestica ENSMODG00000005250 I 0.800
RBMS1 Loxodonta africana ENSLAFG00000017217 I 0.800
RBMS1_BOVIN Bos taurus ENSBTAG00000005180 I 0.800
RBMS1 Tarsius syrichta ENSTSYG00000005584 I 0.800
RBMS1 Oryctolagus cuniculus ENSOCUG00000017365 I 0.800
RBMS1 Pan troglodytes ENSPTRG00000012573 I 0.800
RBMS1 Procavia capensis ENSPCAG00000009673 I 0.800
Ame_R017740 Ailuropoda melanoleuca Ame_R017740 I 0.800
RBMS1 Tursiops truncatus ENSTTRG00000011058 I 0.800
RBMS1 Meleagris gallopavo ENSMGAG00000011054 I 0.799
RBMS1 Taeniopygia guttata ENSTGUG00000006606 I 0.799
O73664_CHICK Gallus gallus ENSGALG00000011132 I 0.799
RBMS1 Tetraodon nigroviridis ENSTNIG00000016496 I 0.799
RBMS1 Anolis carolinensis ENSACAG00000011984 I 0.793
RBMS1 Cavia porcellus ENSCPOG00000012310 I 0.793
RBMS1 Danio rerio ENSDARG00000057768 I 0.791
RBMS1 Equus caballus ENSECAG00000019894 I 0.785
Rbms1 Rattus norvegicus ENSRNOG00000008482 I 0.785
RBMS1 Otolemur garnettii ENSOGAG00000002900 I 0.785
RBMS1 Vicugna pacos ENSVPAG00000002716 I 0.785
RBMS1 Takifugu rubripes ENSTRUG00000005466 I 0.784
RBMS1 Tupaia belangeri ENSTBEG00000016156 I 0.778
Rbms1 Mus musculus ENSMUSG00000026970 I 0.770
RBMS2 Oryzias latipes ENSORLG00000015426 I 0.770
rbms1a Danio rerio ENSDARG00000074023 I 0.765
RBMS2 Loxodonta africana ENSLAFG00000008251 I 0.763
RBMS2 Pan troglodytes ENSPTRG00000005104 I 0.763
RBMS2 Pteropus vampyrus ENSPVAG00000007616 I 0.763
RBMS2 Callithrix jacchus ENSCJAG00000010803 I 0.763
RBMS2_BOVIN Bos taurus ENSBTAG00000017830 I 0.763
rbms2 Xenopus tropicalis ENSXETG00000021787 I 0.763
RBMS2 Vicugna pacos ENSVPAG00000004022 I 0.763
ENSG00000213250 Homo sapiens ENSG00000213250 I 0.763
ENSPPYG00000004665 Pongo pygmaeus ENSPPYG00000004665 I 0.763
RBMS2 Sus scrofa ENSSSCG00000000402 I 0.763
RBMS2 Macaca mulatta ENSMMUG00000019330 I 0.763
RBMS2 Homo sapiens ENSG00000076067 I 0.763
RBMS2 Canis familiaris ENSCAFG00000000134 I 0.761
RBMS1 Gasterosteus aculeatus ENSGACG00000005671 I 0.757
RBMS2 Oryctolagus cuniculus ENSOCUG00000006073 I 0.756
Rbms2 Mus musculus ENSMUSG00000040043 I 0.756
Rbms2 Dipodomys ordii ENSDORG00000009231 I 0.756
RBMS2 Gasterosteus aculeatus ENSGACG00000000617 I 0.756
RBMS2 Takifugu rubripes ENSTRUG00000008492 I 0.756
Ame_R003849 Ailuropoda melanoleuca Ame_R003849 I 0.754
RBMS2 Danio rerio ENSDARG00000056150 I 0.748
RBMS2 Cavia porcellus ENSCPOG00000008256 I 0.748
Rbms2 Rattus norvegicus ENSRNOG00000003076 I 0.748
RBMS2 Equus caballus ENSECAG00000013470 I 0.748
RBMS2 Tetraodon nigroviridis ENSTNIG00000014563 I 0.743
RBMS2 Oryzias latipes ENSORLG00000007807 I 0.741
RBMS2 Anolis carolinensis ENSACAG00000016623 I 0.741
ENSGGOG00000028247 Gorilla gorilla ENSGGOG00000028247 I 0.741
rbms3 Danio rerio ENSDARG00000044574 I 0.733
RBMS3 Takifugu rubripes ENSTRUG00000009128 I 0.733
RBMS2 Tetraodon nigroviridis ENSTNIG00000015056 I 0.731
RBMS2 Takifugu rubripes ENSTRUG00000006839 I 0.731
RBMS3 Tetraodon nigroviridis ENSTNIG00000013819 I 0.730
RBMS3 Gasterosteus aculeatus ENSGACG00000006377 I 0.728
RBMS2 Tupaia belangeri ENSTBEG00000009515 I 0.721
RBMS2 Gasterosteus aculeatus ENSGACG00000009332 I 0.719
RBMS3 Homo sapiens ENSG00000144642 D 0.719
RBMS2 Macropus eugenii ENSMEUG00000015616 I 0.719
RBMS3 Sorex araneus ENSSARG00000000695 I 0.711
RBMS3 Gallus gallus ENSGALG00000011439 I 0.711
RBMS3 Cavia porcellus ENSCPOG00000006457 I 0.711
RBMS3 Callithrix jacchus ENSCJAG00000004312 I 0.711
RBMS3 Tetraodon nigroviridis ENSTNIG00000013818 I 0.711
RBMS3 Bos taurus ENSBTAG00000044062 I 0.711
RBMS3 Tupaia belangeri ENSTBEG00000005362 I 0.711
RBMS3 Oryzias latipes ENSORLG00000005370 I 0.711
RBMS3 Gorilla gorilla ENSGGOG00000007228 I 0.711
RBMS3 Ornithorhynchus anatinus ENSOANG00000010529 I 0.711
RBMS3 Oryctolagus cuniculus ENSOCUG00000004840 I 0.711
RBMS3 Ochotona princeps ENSOPRG00000006808 I 0.711
Rbms3 Mus musculus ENSMUSG00000039607 I 0.711
RBMS3 Monodelphis domestica ENSMODG00000015125 I 0.711
RBMS3 Loxodonta africana ENSLAFG00000000354 I 0.711
RBMS3 Pan troglodytes ENSPTRG00000014709 I 0.711
RBMS3 Macaca mulatta ENSMMUG00000004404 I 0.711
RBMS3 Gasterosteus aculeatus ENSGACG00000003155 I 0.706
RBMS3 Tursiops truncatus ENSTTRG00000006202 I 0.704