RBMS3 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000009128 T42281_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBMS3
M164_0.6 		Homo sapiens HAUAUA RNAcompete
Ray et al.(2013)
RNCMPT00173 		0.940
RBMS3
M055_0.6 		Homo sapiens MUAUAKM RNAcompete
Ray et al.(2013)
RNCMPT00057 		0.940
RBMS1
M143_0.6 		Homo sapiens KAUAUAS RNAcompete
Ray et al.(2013)
RNCMPT00152 		0.867
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000022961 RRM 58 124
ENSTRUP00000022961 RRM 137 203
ENSTRUP00000022962 RRM 49 115
ENSTRUP00000022962 RRM 128 194
ENSTRUP00000022963 RRM 49 115
ENSTRUP00000022963 RRM 128 194
ENSTRUP00000022964 RRM 46 112
ENSTRUP00000022964 RRM 125 191
ENSTRUP00000022965 RRM 46 112
ENSTRUP00000022965 RRM 125 191
ENSTRUP00000022966 RRM 33 99
ENSTRUP00000022966 RRM 112 178

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

120 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBMS3 Tetraodon nigroviridis ENSTNIG00000013819 I 0.978
RBMS3 Gasterosteus aculeatus ENSGACG00000006377 I 0.970
rbms3 Danio rerio ENSDARG00000044574 I 0.963
RBMS3 Oryzias latipes ENSORLG00000005370 I 0.955
RBMS3 Homo sapiens ENSG00000144642 D 0.940
RBMS3 Cavia porcellus ENSCPOG00000006457 I 0.933
RBMS3 Gorilla gorilla ENSGGOG00000007228 I 0.933
RBMS3 Gallus gallus ENSGALG00000011439 I 0.933
RBMS3 Macaca mulatta ENSMMUG00000004404 I 0.933
Rbms3 Mus musculus ENSMUSG00000039607 I 0.933
RBMS3 Pan troglodytes ENSPTRG00000014709 I 0.933
RBMS3 Sorex araneus ENSSARG00000000695 I 0.933
RBMS3 Tupaia belangeri ENSTBEG00000005362 I 0.933
RBMS3 Ochotona princeps ENSOPRG00000006808 I 0.933
RBMS3 Oryctolagus cuniculus ENSOCUG00000004840 I 0.933
RBMS3 Callithrix jacchus ENSCJAG00000004312 I 0.933
RBMS3 Ornithorhynchus anatinus ENSOANG00000010529 I 0.933
RBMS3 Monodelphis domestica ENSMODG00000015125 I 0.933
RBMS3 Loxodonta africana ENSLAFG00000000354 I 0.933
RBMS3 Bos taurus ENSBTAG00000044062 I 0.933
RBMS3 Tursiops truncatus ENSTTRG00000006202 I 0.925
RBMS3 Tetraodon nigroviridis ENSTNIG00000013818 I 0.925
RBMS3 Gasterosteus aculeatus ENSGACG00000003155 I 0.919
RBMS3 Vicugna pacos ENSVPAG00000003842 I 0.889
RBMS3 Sus scrofa ENSSSCG00000011222 I 0.888
RBMS1 Procavia capensis ENSPCAG00000009673 I 0.881
RBMS1 Macaca mulatta ENSMMUG00000016825 I 0.881
RBMS1 Pan troglodytes ENSPTRG00000012573 I 0.881
RBMS1 Homo sapiens ENSG00000153250 D 0.881
RBMS1 Gorilla gorilla ENSGGOG00000001264 I 0.881
RBMS1 Oryctolagus cuniculus ENSOCUG00000017365 I 0.881
RBMS1 Loxodonta africana ENSLAFG00000017217 I 0.881
RBMS1 Otolemur garnettii ENSOGAG00000002900 I 0.881
Ame_R017740 Ailuropoda melanoleuca Ame_R017740 I 0.881
RBMS1 Tarsius syrichta ENSTSYG00000005584 I 0.881
RBMS1 Tursiops truncatus ENSTTRG00000011058 I 0.881
RBMS1 Pteropus vampyrus ENSPVAG00000010429 I 0.881
Rbms1 Dipodomys ordii ENSDORG00000007103 I 0.881
RBMS1_BOVIN Bos taurus ENSBTAG00000005180 I 0.881
A6ML07_CALJA Callithrix jacchus ENSCJAG00000014861 I 0.881
RBMS1 Canis familiaris ENSCAFG00000009922 I 0.881
RBMS1 Sus scrofa ENSSSCG00000015888 I 0.881
RBMS1 Anolis carolinensis ENSACAG00000011984 I 0.874
RBMS3 Myotis lucifugus ENSMLUG00000000659 I 0.873
RBMS2 Oryzias latipes ENSORLG00000015426 I 0.873
ENSPPYG00000012879 Pongo pygmaeus ENSPPYG00000012879 I 0.873
RBMS1 Cavia porcellus ENSCPOG00000012310 I 0.873
Rbms1 Rattus norvegicus ENSRNOG00000008482 I 0.873
RBMS1 Spermophilus tridecemlineatus ENSSTOG00000012501 I 0.873
RBMS1 Monodelphis domestica ENSMODG00000005250 I 0.873
RBMS1 Ornithorhynchus anatinus ENSOANG00000006166 I 0.867
RBMS1 Taeniopygia guttata ENSTGUG00000006606 I 0.866
RBMS1 Vicugna pacos ENSVPAG00000002716 I 0.866
O73664_CHICK Gallus gallus ENSGALG00000011132 I 0.866
RBMS1 Meleagris gallopavo ENSMGAG00000011054 I 0.866
RBMS2 Gasterosteus aculeatus ENSGACG00000000617 I 0.866
RBMS1 Equus caballus ENSECAG00000019894 I 0.866
RBMS2 Danio rerio ENSDARG00000056150 I 0.866
Rbms1 Mus musculus ENSMUSG00000026970 I 0.858
RBMS1 Tupaia belangeri ENSTBEG00000016156 I 0.858
RBMS1 Danio rerio ENSDARG00000057768 I 0.858
RBMS2 Cavia porcellus ENSCPOG00000008256 I 0.858
RBMS2 Takifugu rubripes ENSTRUG00000008492 I 0.852
RBMS2 Pan troglodytes ENSPTRG00000005104 I 0.851
RBMS3 Pteropus vampyrus ENSPVAG00000014037 I 0.851
ENSPPYG00000004665 Pongo pygmaeus ENSPPYG00000004665 I 0.851
RBMS2 Macaca mulatta ENSMMUG00000019330 I 0.851
AAH43623 Xenopus laevis AAH43623 I 0.851
rbms2 Xenopus tropicalis ENSXETG00000021787 I 0.851
RBMS2 Callithrix jacchus ENSCJAG00000010803 I 0.851
RBMS2 Loxodonta africana ENSLAFG00000008251 I 0.851
RBMS2 Homo sapiens ENSG00000076067 I 0.851
RBMS2 Tetraodon nigroviridis ENSTNIG00000014563 I 0.844
RBMS1 Tetraodon nigroviridis ENSTNIG00000016496 I 0.844
RBMS2_BOVIN Bos taurus ENSBTAG00000017830 I 0.843
RBMS2 Vicugna pacos ENSVPAG00000004022 I 0.843
Rbms2 Mus musculus ENSMUSG00000040043 I 0.843
RBMS2 Oryzias latipes ENSORLG00000007807 I 0.843
RBMS2 Pteropus vampyrus ENSPVAG00000007616 I 0.843
Rbms2 Dipodomys ordii ENSDORG00000009231 I 0.843
Rbms2 Rattus norvegicus ENSRNOG00000003076 I 0.843
RBMS2 Oryctolagus cuniculus ENSOCUG00000006073 I 0.843
RBMS2 Sus scrofa ENSSSCG00000000402 I 0.843
ENSG00000213250 Homo sapiens ENSG00000213250 I 0.837
RBMS2 Canis familiaris ENSCAFG00000000134 I 0.836
Ame_R003849 Ailuropoda melanoleuca Ame_R003849 I 0.836
RBMS2 Gasterosteus aculeatus ENSGACG00000009332 I 0.836
RBMS1 Takifugu rubripes ENSTRUG00000005466 I 0.830
RBMS2 Tetraodon nigroviridis ENSTNIG00000015056 I 0.828
ENSGGOG00000028247 Gorilla gorilla ENSGGOG00000028247 I 0.828
RBMS2 Anolis carolinensis ENSACAG00000016623 I 0.822
RBMS2 Takifugu rubripes ENSTRUG00000006839 I 0.821
RBMS1 Gasterosteus aculeatus ENSGACG00000005671 I 0.816
rbms1a Danio rerio ENSDARG00000074023 I 0.815
RBMS2 Equus caballus ENSECAG00000013470 I 0.815
RBMS1 Oryzias latipes ENSORLG00000016818 I 0.815
RBMS2 Macropus eugenii ENSMEUG00000015616 I 0.806
RBMS3 Choloepus hoffmanni ENSCHOG00000000758 I 0.791
RBMS2 Tupaia belangeri ENSTBEG00000009515 I 0.787
RBMS3 Macropus eugenii ENSMEUG00000004772 I 0.784
RBMS3 Dasypus novemcinctus ENSDNOG00000016645 I 0.784
RBMS3 Erinaceus europaeus ENSEEUG00000014337 I 0.784
RBMS3 Echinops telfairi ENSETEG00000009485 I 0.769
RBMS1 Oryzias latipes ENSORLG00000003917 I 0.756
RBMS1 Microcebus murinus ENSMICG00000008325 I 0.754
RBMS2 Tursiops truncatus ENSTTRG00000002117 I 0.746
RBMS1 Ochotona princeps ENSOPRG00000012431 I 0.746
RBMS1 Echinops telfairi ENSETEG00000012135 I 0.746
RBMS1 Sorex araneus ENSSARG00000011085 I 0.746
RBMS1 Takifugu rubripes ENSTRUG00000017155 I 0.741
RBMS3 Tarsius syrichta ENSTSYG00000002615 I 0.741
D4A288_RAT Rattus norvegicus ENSRNOG00000023845 I 0.737
RBMS1 Gasterosteus aculeatus ENSGACG00000015174 I 0.733
RBMS1 Tetraodon nigroviridis ENSTNIG00000009477 I 0.733
ENSGGOG00000011570 Gorilla gorilla ENSGGOG00000011570 I 0.728
RBMS3 Procavia capensis ENSPCAG00000006307 I 0.719
RBMS2 Felis catus ENSFCAG00000012028 I 0.709
rbms1 Xenopus tropicalis ENSXETG00000016204 I 0.704
RBMS2 Dasypus novemcinctus ENSDNOG00000011198 I 0.704