RBMS3 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000013819 T42119_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBMS3
M164_0.6 		Homo sapiens HAUAUA RNAcompete
Ray et al.(2013)
RNCMPT00173 		0.934
RBMS3
M055_0.6 		Homo sapiens MUAUAKM RNAcompete
Ray et al.(2013)
RNCMPT00057 		0.934
RBMS1
M143_0.6 		Homo sapiens KAUAUAS RNAcompete
Ray et al.(2013)
RNCMPT00152 		0.861
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000002683 RRM 39 107
ENSTNIP00000002683 RRM 120 186
ENSTNIP00000016822 RRM 36 104
ENSTNIP00000016822 RRM 117 183

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

117 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBMS3 Takifugu rubripes ENSTRUG00000009128 I 0.978
RBMS3 Gasterosteus aculeatus ENSGACG00000006377 I 0.971
rbms3 Danio rerio ENSDARG00000044574 I 0.956
RBMS3 Oryzias latipes ENSORLG00000005370 I 0.949
RBMS3 Homo sapiens ENSG00000144642 D 0.934
RBMS3 Loxodonta africana ENSLAFG00000000354 I 0.926
RBMS3 Gorilla gorilla ENSGGOG00000007228 I 0.926
RBMS3 Callithrix jacchus ENSCJAG00000004312 I 0.926
RBMS3 Cavia porcellus ENSCPOG00000006457 I 0.926
RBMS3 Macaca mulatta ENSMMUG00000004404 I 0.926
Rbms3 Mus musculus ENSMUSG00000039607 I 0.926
RBMS3 Pan troglodytes ENSPTRG00000014709 I 0.926
RBMS3 Sorex araneus ENSSARG00000000695 I 0.926
RBMS3 Tupaia belangeri ENSTBEG00000005362 I 0.926
RBMS3 Ochotona princeps ENSOPRG00000006808 I 0.926
RBMS3 Oryctolagus cuniculus ENSOCUG00000004840 I 0.926
RBMS3 Bos taurus ENSBTAG00000044062 I 0.926
RBMS3 Ornithorhynchus anatinus ENSOANG00000010529 I 0.926
RBMS3 Monodelphis domestica ENSMODG00000015125 I 0.926
RBMS3 Gallus gallus ENSGALG00000011439 I 0.926
RBMS3 Gasterosteus aculeatus ENSGACG00000003155 I 0.919
RBMS3 Tursiops truncatus ENSTTRG00000006202 I 0.919
RBMS3 Tetraodon nigroviridis ENSTNIG00000013818 I 0.919
RBMS3 Vicugna pacos ENSVPAG00000003842 I 0.890
RBMS3 Sus scrofa ENSSSCG00000011222 I 0.882
Rbms1 Dipodomys ordii ENSDORG00000007103 I 0.875
RBMS1 Oryctolagus cuniculus ENSOCUG00000017365 I 0.875
RBMS1 Otolemur garnettii ENSOGAG00000002900 I 0.875
RBMS1 Tarsius syrichta ENSTSYG00000005584 I 0.875
RBMS1 Macaca mulatta ENSMMUG00000016825 I 0.875
RBMS1 Tursiops truncatus ENSTTRG00000011058 I 0.875
RBMS1 Gorilla gorilla ENSGGOG00000001264 I 0.875
RBMS1 Loxodonta africana ENSLAFG00000017217 I 0.875
RBMS1 Homo sapiens ENSG00000153250 D 0.875
RBMS1 Procavia capensis ENSPCAG00000009673 I 0.875
A6ML07_CALJA Callithrix jacchus ENSCJAG00000014861 I 0.875
RBMS1 Canis familiaris ENSCAFG00000009922 I 0.875
Ame_R017740 Ailuropoda melanoleuca Ame_R017740 I 0.875
RBMS1 Sus scrofa ENSSSCG00000015888 I 0.875
RBMS1 Pteropus vampyrus ENSPVAG00000010429 I 0.875
RBMS1_BOVIN Bos taurus ENSBTAG00000005180 I 0.875
RBMS1 Pan troglodytes ENSPTRG00000012573 I 0.875
RBMS1 Anolis carolinensis ENSACAG00000011984 I 0.869
RBMS1 Spermophilus tridecemlineatus ENSSTOG00000012501 I 0.868
RBMS1 Monodelphis domestica ENSMODG00000005250 I 0.868
RBMS1 Cavia porcellus ENSCPOG00000012310 I 0.868
RBMS3 Myotis lucifugus ENSMLUG00000000659 I 0.868
ENSPPYG00000012879 Pongo pygmaeus ENSPPYG00000012879 I 0.868
Rbms1 Rattus norvegicus ENSRNOG00000008482 I 0.868
RBMS1 Ornithorhynchus anatinus ENSOANG00000006166 I 0.861
RBMS1 Vicugna pacos ENSVPAG00000002716 I 0.860
RBMS2 Oryzias latipes ENSORLG00000015426 I 0.860
RBMS1 Taeniopygia guttata ENSTGUG00000006606 I 0.860
O73664_CHICK Gallus gallus ENSGALG00000011132 I 0.860
RBMS1 Meleagris gallopavo ENSMGAG00000011054 I 0.860
RBMS1 Equus caballus ENSECAG00000019894 I 0.860
RBMS2 Danio rerio ENSDARG00000056150 I 0.853
RBMS2 Gasterosteus aculeatus ENSGACG00000000617 I 0.853
RBMS1 Tupaia belangeri ENSTBEG00000016156 I 0.853
Rbms1 Mus musculus ENSMUSG00000026970 I 0.853
RBMS2 Cavia porcellus ENSCPOG00000008256 I 0.846
RBMS2 Takifugu rubripes ENSTRUG00000008492 I 0.839
RBMS1 Danio rerio ENSDARG00000057768 I 0.838
RBMS2 Macaca mulatta ENSMMUG00000019330 I 0.838
AAH43623 Xenopus laevis AAH43623 I 0.838
RBMS2 Loxodonta africana ENSLAFG00000008251 I 0.838
RBMS3 Pteropus vampyrus ENSPVAG00000014037 I 0.838
RBMS2 Callithrix jacchus ENSCJAG00000010803 I 0.838
ENSPPYG00000004665 Pongo pygmaeus ENSPPYG00000004665 I 0.838
RBMS2 Pan troglodytes ENSPTRG00000005104 I 0.838
RBMS2 Homo sapiens ENSG00000076067 I 0.838
rbms2 Xenopus tropicalis ENSXETG00000021787 I 0.838
RBMS1 Tetraodon nigroviridis ENSTNIG00000016496 I 0.832
RBMS2 Tetraodon nigroviridis ENSTNIG00000014563 I 0.832
RBMS2 Oryzias latipes ENSORLG00000007807 I 0.831
RBMS2 Vicugna pacos ENSVPAG00000004022 I 0.831
RBMS2 Pteropus vampyrus ENSPVAG00000007616 I 0.831
Rbms2 Rattus norvegicus ENSRNOG00000003076 I 0.831
RBMS2 Oryctolagus cuniculus ENSOCUG00000006073 I 0.831
RBMS2_BOVIN Bos taurus ENSBTAG00000017830 I 0.831
Rbms2 Mus musculus ENSMUSG00000040043 I 0.831
RBMS2 Sus scrofa ENSSSCG00000000402 I 0.831
Rbms2 Dipodomys ordii ENSDORG00000009231 I 0.831
ENSG00000213250 Homo sapiens ENSG00000213250 I 0.825
RBMS2 Canis familiaris ENSCAFG00000000134 I 0.824
RBMS2 Gasterosteus aculeatus ENSGACG00000009332 I 0.824
Ame_R003849 Ailuropoda melanoleuca Ame_R003849 I 0.824
RBMS1 Takifugu rubripes ENSTRUG00000005466 I 0.818
ENSGGOG00000028247 Gorilla gorilla ENSGGOG00000028247 I 0.816
RBMS2 Tetraodon nigroviridis ENSTNIG00000015056 I 0.816
rbms1a Danio rerio ENSDARG00000074023 I 0.810
RBMS2 Anolis carolinensis ENSACAG00000016623 I 0.810
RBMS2 Takifugu rubripes ENSTRUG00000006839 I 0.809
RBMS1 Gasterosteus aculeatus ENSGACG00000005671 I 0.804
RBMS2 Equus caballus ENSECAG00000013470 I 0.803
RBMS1 Oryzias latipes ENSORLG00000016818 I 0.803
RBMS2 Macropus eugenii ENSMEUG00000015616 I 0.794
RBMS3 Erinaceus europaeus ENSEEUG00000014337 I 0.779
RBMS3 Macropus eugenii ENSMEUG00000004772 I 0.779
RBMS3 Choloepus hoffmanni ENSCHOG00000000758 I 0.779
RBMS3 Dasypus novemcinctus ENSDNOG00000016645 I 0.779
RBMS2 Tupaia belangeri ENSTBEG00000009515 I 0.775
RBMS3 Echinops telfairi ENSETEG00000009485 I 0.757
RBMS1 Oryzias latipes ENSORLG00000003917 I 0.752
RBMS1 Microcebus murinus ENSMICG00000008325 I 0.750
RBMS1 Ochotona princeps ENSOPRG00000012431 I 0.743
RBMS3 Tarsius syrichta ENSTSYG00000002615 I 0.743
RBMS1 Echinops telfairi ENSETEG00000012135 I 0.743
RBMS1 Sorex araneus ENSSARG00000011085 I 0.743
RBMS1 Takifugu rubripes ENSTRUG00000017155 I 0.737
RBMS2 Tursiops truncatus ENSTTRG00000002117 I 0.735
RBMS1 Gasterosteus aculeatus ENSGACG00000015174 I 0.730
RBMS1 Tetraodon nigroviridis ENSTNIG00000009477 I 0.730
D4A288_RAT Rattus norvegicus ENSRNOG00000023845 I 0.727
ENSGGOG00000011570 Gorilla gorilla ENSGGOG00000011570 I 0.717
RBMS3 Procavia capensis ENSPCAG00000006307 I 0.713