RBMS1 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000005466 T42236_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBMS1
M143_0.6 		Homo sapiens KAUAUAS RNAcompete
Ray et al.(2013)
RNCMPT00152 		0.867
RBMS3
M164_0.6 		Homo sapiens HAUAUA RNAcompete
Ray et al.(2013)
RNCMPT00173 		0.807
RBMS3
M055_0.6 		Homo sapiens MUAUAKM RNAcompete
Ray et al.(2013)
RNCMPT00057 		0.807
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000013123 RRM 58 125
ENSTRUP00000013123 RRM 137 202
ENSTRUP00000013124 RRM 36 103
ENSTRUP00000013124 RRM 115 180

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBMS1 Tetraodon nigroviridis ENSTNIG00000016496 I 0.955
RBMS1 Oryzias latipes ENSORLG00000016818 I 0.896
RBMS1 Gasterosteus aculeatus ENSGACG00000005671 I 0.890
RBMS1 Ornithorhynchus anatinus ENSOANG00000006166 I 0.889
RBMS1 Monodelphis domestica ENSMODG00000005250 I 0.889
RBMS1 Anolis carolinensis ENSACAG00000011984 I 0.881
ENSPPYG00000012879 Pongo pygmaeus ENSPPYG00000012879 I 0.881
RBMS1 Spermophilus tridecemlineatus ENSSTOG00000012501 I 0.881
AAH43623 Xenopus laevis AAH43623 I 0.881
A6ML07_CALJA Callithrix jacchus ENSCJAG00000014861 I 0.874
RBMS1 Homo sapiens ENSG00000153250 D 0.874
Rbms1 Dipodomys ordii ENSDORG00000007103 I 0.874
RBMS1 Pteropus vampyrus ENSPVAG00000010429 I 0.874
RBMS1 Procavia capensis ENSPCAG00000009673 I 0.874
RBMS1 Oryctolagus cuniculus ENSOCUG00000017365 I 0.874
RBMS1 Macaca mulatta ENSMMUG00000016825 I 0.874
RBMS1 Pan troglodytes ENSPTRG00000012573 I 0.874
RBMS1 Loxodonta africana ENSLAFG00000017217 I 0.874
RBMS1 Canis familiaris ENSCAFG00000009922 I 0.874
RBMS1 Gorilla gorilla ENSGGOG00000001264 I 0.874
RBMS1 Sus scrofa ENSSSCG00000015888 I 0.874
Ame_R017740 Ailuropoda melanoleuca Ame_R017740 I 0.874
RBMS1 Tursiops truncatus ENSTTRG00000011058 I 0.874
RBMS1 Tarsius syrichta ENSTSYG00000005584 I 0.874
RBMS1_BOVIN Bos taurus ENSBTAG00000005180 I 0.874
RBMS2 Takifugu rubripes ENSTRUG00000008492 I 0.874
RBMS1 Meleagris gallopavo ENSMGAG00000011054 I 0.873
O73664_CHICK Gallus gallus ENSGALG00000011132 I 0.873
RBMS1 Taeniopygia guttata ENSTGUG00000006606 I 0.873
RBMS1 Vicugna pacos ENSVPAG00000002716 I 0.867
RBMS2 Homo sapiens ENSG00000076067 I 0.867
RBMS2 Callithrix jacchus ENSCJAG00000010803 I 0.867
ENSG00000213250 Homo sapiens ENSG00000213250 I 0.867
rbms2 Xenopus tropicalis ENSXETG00000021787 I 0.867
RBMS2 Loxodonta africana ENSLAFG00000008251 I 0.867
RBMS2_BOVIN Bos taurus ENSBTAG00000017830 I 0.867
RBMS1 Cavia porcellus ENSCPOG00000012310 I 0.867
RBMS2 Macaca mulatta ENSMMUG00000019330 I 0.867
RBMS1 Equus caballus ENSECAG00000019894 I 0.867
RBMS2 Oryzias latipes ENSORLG00000015426 I 0.867
ENSPPYG00000004665 Pongo pygmaeus ENSPPYG00000004665 I 0.867
RBMS2 Pan troglodytes ENSPTRG00000005104 I 0.867
RBMS1 Danio rerio ENSDARG00000057768 I 0.866
ENSGGOG00000028247 Gorilla gorilla ENSGGOG00000028247 I 0.859
RBMS1 Otolemur garnettii ENSOGAG00000002900 I 0.859
Rbms1 Rattus norvegicus ENSRNOG00000008482 I 0.859
RBMS2 Oryctolagus cuniculus ENSOCUG00000006073 I 0.859
Rbms2 Mus musculus ENSMUSG00000040043 I 0.859
RBMS2 Pteropus vampyrus ENSPVAG00000007616 I 0.859
RBMS2 Vicugna pacos ENSVPAG00000004022 I 0.859
Rbms2 Rattus norvegicus ENSRNOG00000003076 I 0.859
Rbms2 Dipodomys ordii ENSDORG00000009231 I 0.859
RBMS2 Sus scrofa ENSSSCG00000000402 I 0.859
RBMS2 Gasterosteus aculeatus ENSGACG00000000617 I 0.859
RBMS2 Canis familiaris ENSCAFG00000000134 I 0.858
RBMS1 Tupaia belangeri ENSTBEG00000016156 I 0.852
Rbms1 Mus musculus ENSMUSG00000026970 I 0.852
RBMS2 Equus caballus ENSECAG00000013470 I 0.852
RBMS2 Cavia porcellus ENSCPOG00000008256 I 0.852
Ame_R003849 Ailuropoda melanoleuca Ame_R003849 I 0.851
RBMS2 Tetraodon nigroviridis ENSTNIG00000014563 I 0.846
rbms1a Danio rerio ENSDARG00000074023 I 0.838
RBMS2 Danio rerio ENSDARG00000056150 I 0.837
RBMS2 Gasterosteus aculeatus ENSGACG00000009332 I 0.837
RBMS2 Oryzias latipes ENSORLG00000007807 I 0.837
RBMS2 Takifugu rubripes ENSTRUG00000006839 I 0.836
RBMS3 Takifugu rubripes ENSTRUG00000009128 I 0.830
RBMS2 Anolis carolinensis ENSACAG00000016623 I 0.830
RBMS2 Tetraodon nigroviridis ENSTNIG00000015056 I 0.828
RBMS2 Macropus eugenii ENSMEUG00000015616 I 0.822
rbms3 Danio rerio ENSDARG00000044574 I 0.822
RBMS3 Tetraodon nigroviridis ENSTNIG00000013819 I 0.818
RBMS2 Tupaia belangeri ENSTBEG00000009515 I 0.816
RBMS3 Gasterosteus aculeatus ENSGACG00000006377 I 0.816
RBMS3 Oryzias latipes ENSORLG00000005370 I 0.807
RBMS3 Tetraodon nigroviridis ENSTNIG00000013818 I 0.807
RBMS3 Homo sapiens ENSG00000144642 D 0.807
RBMS3 Gasterosteus aculeatus ENSGACG00000003155 I 0.801
RBMS3 Sorex araneus ENSSARG00000000695 I 0.800
RBMS3 Pan troglodytes ENSPTRG00000014709 I 0.800
RBMS3 Tupaia belangeri ENSTBEG00000005362 I 0.800
RBMS3 Loxodonta africana ENSLAFG00000000354 I 0.800
RBMS3 Gorilla gorilla ENSGGOG00000007228 I 0.800
RBMS3 Macaca mulatta ENSMMUG00000004404 I 0.800
RBMS3 Cavia porcellus ENSCPOG00000006457 I 0.800
RBMS3 Callithrix jacchus ENSCJAG00000004312 I 0.800
RBMS3 Bos taurus ENSBTAG00000044062 I 0.800
RBMS3 Monodelphis domestica ENSMODG00000015125 I 0.800
RBMS3 Gallus gallus ENSGALG00000011439 I 0.800
RBMS3 Ochotona princeps ENSOPRG00000006808 I 0.800
Rbms3 Mus musculus ENSMUSG00000039607 I 0.800
RBMS3 Oryctolagus cuniculus ENSOCUG00000004840 I 0.800
RBMS3 Ornithorhynchus anatinus ENSOANG00000010529 I 0.800
RBMS3 Tursiops truncatus ENSTTRG00000006202 I 0.793
RBMS1 Takifugu rubripes ENSTRUG00000017155 I 0.791
RBMS1 Gasterosteus aculeatus ENSGACG00000015174 I 0.791
RBMS1 Tetraodon nigroviridis ENSTNIG00000009477 I 0.784
RBMS1 Oryzias latipes ENSORLG00000003917 I 0.778
RBMS2 Tursiops truncatus ENSTTRG00000002117 I 0.770
D4A288_RAT Rattus norvegicus ENSRNOG00000023845 I 0.768
RBMS3 Vicugna pacos ENSVPAG00000003842 I 0.765
RBMS3 Sus scrofa ENSSSCG00000011222 I 0.756
rbms1 Xenopus tropicalis ENSXETG00000016204 I 0.750
RBMS3 Myotis lucifugus ENSMLUG00000000659 I 0.741
ENSGGOG00000011570 Gorilla gorilla ENSGGOG00000011570 I 0.735
RBMS1 Ochotona princeps ENSOPRG00000012431 I 0.731
RBMS2 Felis catus ENSFCAG00000012028 I 0.731
RBMS1 Sorex araneus ENSSARG00000011085 I 0.731
RBMS1 Echinops telfairi ENSETEG00000012135 I 0.731
RBMS1 Microcebus murinus ENSMICG00000008325 I 0.724
RBMS3 Pteropus vampyrus ENSPVAG00000014037 I 0.719
RBMS2 Sorex araneus ENSSARG00000012553 I 0.719
RBMS2 Dasypus novemcinctus ENSDNOG00000011198 I 0.711
RBMS2 Myotis lucifugus ENSMLUG00000000530 I 0.711
RBMS2 Otolemur garnettii ENSOGAG00000003534 I 0.701