RBMS1 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000016818 T40241_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBMS1
M143_0.6 		Homo sapiens KAUAUAS RNAcompete
Ray et al.(2013)
RNCMPT00152 		0.881
RBMS3
M164_0.6 		Homo sapiens HAUAUA RNAcompete
Ray et al.(2013)
RNCMPT00173 		0.815
RBMS3
M055_0.6 		Homo sapiens MUAUAKM RNAcompete
Ray et al.(2013)
RNCMPT00057 		0.815
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000021045 RRM 56 123
ENSORLP00000021045 RRM 135 200

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBMS1 Tetraodon nigroviridis ENSTNIG00000016496 I 0.925
ENSPPYG00000012879 Pongo pygmaeus ENSPPYG00000012879 I 0.896
AAH43623 Xenopus laevis AAH43623 I 0.896
RBMS1 Takifugu rubripes ENSTRUG00000005466 I 0.896
RBMS1 Danio rerio ENSDARG00000057768 I 0.896
RBMS1 Spermophilus tridecemlineatus ENSSTOG00000012501 I 0.896
RBMS1 Procavia capensis ENSPCAG00000009673 I 0.889
RBMS1_BOVIN Bos taurus ENSBTAG00000005180 I 0.889
RBMS1 Loxodonta africana ENSLAFG00000017217 I 0.889
RBMS1 Tursiops truncatus ENSTTRG00000011058 I 0.889
A6ML07_CALJA Callithrix jacchus ENSCJAG00000014861 I 0.889
RBMS1 Ornithorhynchus anatinus ENSOANG00000006166 I 0.889
RBMS1 Pan troglodytes ENSPTRG00000012573 I 0.889
RBMS1 Monodelphis domestica ENSMODG00000005250 I 0.889
RBMS1 Canis familiaris ENSCAFG00000009922 I 0.889
RBMS1 Gorilla gorilla ENSGGOG00000001264 I 0.889
RBMS1 Sus scrofa ENSSSCG00000015888 I 0.889
RBMS1 Macaca mulatta ENSMMUG00000016825 I 0.889
Rbms1 Rattus norvegicus ENSRNOG00000008482 I 0.889
RBMS1 Homo sapiens ENSG00000153250 D 0.889
RBMS1 Pteropus vampyrus ENSPVAG00000010429 I 0.889
RBMS1 Oryctolagus cuniculus ENSOCUG00000017365 I 0.889
RBMS1 Tarsius syrichta ENSTSYG00000005584 I 0.889
Ame_R017740 Ailuropoda melanoleuca Ame_R017740 I 0.889
Rbms1 Dipodomys ordii ENSDORG00000007103 I 0.889
O73664_CHICK Gallus gallus ENSGALG00000011132 I 0.888
RBMS1 Meleagris gallopavo ENSMGAG00000011054 I 0.888
RBMS1 Taeniopygia guttata ENSTGUG00000006606 I 0.888
RBMS1 Gasterosteus aculeatus ENSGACG00000005671 I 0.882
RBMS1 Anolis carolinensis ENSACAG00000011984 I 0.881
RBMS1 Cavia porcellus ENSCPOG00000012310 I 0.881
Rbms1 Mus musculus ENSMUSG00000026970 I 0.874
RBMS1 Equus caballus ENSECAG00000019894 I 0.874
RBMS1 Otolemur garnettii ENSOGAG00000002900 I 0.874
RBMS1 Vicugna pacos ENSVPAG00000002716 I 0.874
RBMS1 Tupaia belangeri ENSTBEG00000016156 I 0.867
rbms2 Xenopus tropicalis ENSXETG00000021787 I 0.859
RBMS2 Oryzias latipes ENSORLG00000015426 I 0.859
RBMS2 Takifugu rubripes ENSTRUG00000008492 I 0.852
RBMS2 Homo sapiens ENSG00000076067 I 0.852
RBMS2_BOVIN Bos taurus ENSBTAG00000017830 I 0.852
RBMS2 Macaca mulatta ENSMMUG00000019330 I 0.852
RBMS2 Callithrix jacchus ENSCJAG00000010803 I 0.852
ENSG00000213250 Homo sapiens ENSG00000213250 I 0.852
RBMS2 Gasterosteus aculeatus ENSGACG00000000617 I 0.852
RBMS2 Loxodonta africana ENSLAFG00000008251 I 0.852
RBMS2 Pan troglodytes ENSPTRG00000005104 I 0.852
ENSPPYG00000004665 Pongo pygmaeus ENSPPYG00000004665 I 0.852
rbms1a Danio rerio ENSDARG00000074023 I 0.846
RBMS2 Pteropus vampyrus ENSPVAG00000007616 I 0.844
RBMS2 Sus scrofa ENSSSCG00000000402 I 0.844
Rbms2 Dipodomys ordii ENSDORG00000009231 I 0.844
Rbms2 Rattus norvegicus ENSRNOG00000003076 I 0.844
RBMS2 Oryctolagus cuniculus ENSOCUG00000006073 I 0.844
Rbms2 Mus musculus ENSMUSG00000040043 I 0.844
RBMS2 Vicugna pacos ENSVPAG00000004022 I 0.844
RBMS2 Canis familiaris ENSCAFG00000000134 I 0.843
RBMS2 Tetraodon nigroviridis ENSTNIG00000014563 I 0.838
RBMS2 Danio rerio ENSDARG00000056150 I 0.837
RBMS2 Cavia porcellus ENSCPOG00000008256 I 0.837
Ame_R003849 Ailuropoda melanoleuca Ame_R003849 I 0.836
RBMS2 Oryzias latipes ENSORLG00000007807 I 0.830
RBMS2 Equus caballus ENSECAG00000013470 I 0.830
ENSGGOG00000028247 Gorilla gorilla ENSGGOG00000028247 I 0.830
RBMS1 Takifugu rubripes ENSTRUG00000017155 I 0.828
RBMS2 Anolis carolinensis ENSACAG00000016623 I 0.822
rbms3 Danio rerio ENSDARG00000044574 I 0.822
RBMS1 Tetraodon nigroviridis ENSTNIG00000009477 I 0.821
RBMS1 Gasterosteus aculeatus ENSGACG00000015174 I 0.821
RBMS3 Takifugu rubripes ENSTRUG00000009128 I 0.815
RBMS2 Gasterosteus aculeatus ENSGACG00000009332 I 0.815
RBMS1 Oryzias latipes ENSORLG00000003917 I 0.815
RBMS3 Homo sapiens ENSG00000144642 D 0.815
RBMS2 Takifugu rubripes ENSTRUG00000006839 I 0.813
RBMS2 Tetraodon nigroviridis ENSTNIG00000015056 I 0.813
RBMS3 Gasterosteus aculeatus ENSGACG00000006377 I 0.809
Rbms3 Mus musculus ENSMUSG00000039607 I 0.807
RBMS3 Oryctolagus cuniculus ENSOCUG00000004840 I 0.807
RBMS3 Monodelphis domestica ENSMODG00000015125 I 0.807
RBMS3 Loxodonta africana ENSLAFG00000000354 I 0.807
RBMS3 Macaca mulatta ENSMMUG00000004404 I 0.807
RBMS3 Ochotona princeps ENSOPRG00000006808 I 0.807
RBMS3 Ornithorhynchus anatinus ENSOANG00000010529 I 0.807
RBMS2 Macropus eugenii ENSMEUG00000015616 I 0.807
RBMS3 Cavia porcellus ENSCPOG00000006457 I 0.807
RBMS3 Callithrix jacchus ENSCJAG00000004312 I 0.807
RBMS3 Bos taurus ENSBTAG00000044062 I 0.807
RBMS3 Tupaia belangeri ENSTBEG00000005362 I 0.807
RBMS3 Sorex araneus ENSSARG00000000695 I 0.807
RBMS3 Gorilla gorilla ENSGGOG00000007228 I 0.807
RBMS3 Pan troglodytes ENSPTRG00000014709 I 0.807
RBMS3 Gallus gallus ENSGALG00000011439 I 0.807
RBMS3 Tetraodon nigroviridis ENSTNIG00000013819 I 0.803
RBMS2 Tupaia belangeri ENSTBEG00000009515 I 0.801
RBMS3 Tetraodon nigroviridis ENSTNIG00000013818 I 0.800
RBMS3 Tursiops truncatus ENSTTRG00000006202 I 0.800
RBMS3 Gasterosteus aculeatus ENSGACG00000003155 I 0.794
RBMS3 Oryzias latipes ENSORLG00000005370 I 0.793
RBMS3 Vicugna pacos ENSVPAG00000003842 I 0.765
RBMS3 Sus scrofa ENSSSCG00000011222 I 0.763
RBMS2 Tursiops truncatus ENSTTRG00000002117 I 0.763
RBMS3 Myotis lucifugus ENSMLUG00000000659 I 0.756
D4A288_RAT Rattus norvegicus ENSRNOG00000023845 I 0.754
rbms1 Xenopus tropicalis ENSXETG00000016204 I 0.743
RBMS1 Ochotona princeps ENSOPRG00000012431 I 0.739
RBMS1 Echinops telfairi ENSETEG00000012135 I 0.739
RBMS1 Sorex araneus ENSSARG00000011085 I 0.739
RBMS1 Microcebus murinus ENSMICG00000008325 I 0.731
RBMS3 Pteropus vampyrus ENSPVAG00000014037 I 0.726
RBMS2 Felis catus ENSFCAG00000012028 I 0.724
ENSGGOG00000011570 Gorilla gorilla ENSGGOG00000011570 I 0.713