RBMS1 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000057768 T36182_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBMS1
M143_0.6 		Homo sapiens KAUAUAS RNAcompete
Ray et al.(2013)
RNCMPT00152 		0.889
RBMS3
M164_0.6 		Homo sapiens HAUAUA RNAcompete
Ray et al.(2013)
RNCMPT00173 		0.843
RBMS3
M055_0.6 		Homo sapiens MUAUAKM RNAcompete
Ray et al.(2013)
RNCMPT00057 		0.843
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000008860 RRM 40 106
ENSDARP00000008860 RRM 119 184

Links

Other RRM family RBPs
Other Danio rerio RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBMS1 Spermophilus tridecemlineatus ENSSTOG00000012501 I 0.910
AAH43623 Xenopus laevis AAH43623 I 0.910
RBMS1 Pteropus vampyrus ENSPVAG00000010429 I 0.903
Ame_R017740 Ailuropoda melanoleuca Ame_R017740 I 0.903
RBMS1 Loxodonta africana ENSLAFG00000017217 I 0.903
RBMS1 Tursiops truncatus ENSTTRG00000011058 I 0.903
RBMS1 Sus scrofa ENSSSCG00000015888 I 0.903
RBMS1 Tetraodon nigroviridis ENSTNIG00000016496 I 0.903
RBMS1 Tarsius syrichta ENSTSYG00000005584 I 0.903
RBMS1 Homo sapiens ENSG00000153250 D 0.903
RBMS1_BOVIN Bos taurus ENSBTAG00000005180 I 0.903
RBMS1 Otolemur garnettii ENSOGAG00000002900 I 0.903
Rbms1 Dipodomys ordii ENSDORG00000007103 I 0.903
RBMS1 Oryctolagus cuniculus ENSOCUG00000017365 I 0.903
A6ML07_CALJA Callithrix jacchus ENSCJAG00000014861 I 0.903
RBMS1 Macaca mulatta ENSMMUG00000016825 I 0.903
RBMS1 Pan troglodytes ENSPTRG00000012573 I 0.903
RBMS1 Canis familiaris ENSCAFG00000009922 I 0.903
RBMS1 Procavia capensis ENSPCAG00000009673 I 0.903
RBMS1 Gorilla gorilla ENSGGOG00000001264 I 0.903
RBMS1 Meleagris gallopavo ENSMGAG00000011054 I 0.902
O73664_CHICK Gallus gallus ENSGALG00000011132 I 0.902
RBMS1 Taeniopygia guttata ENSTGUG00000006606 I 0.902
RBMS1 Anolis carolinensis ENSACAG00000011984 I 0.896
ENSPPYG00000012879 Pongo pygmaeus ENSPPYG00000012879 I 0.896
RBMS1 Monodelphis domestica ENSMODG00000005250 I 0.896
RBMS1 Oryzias latipes ENSORLG00000016818 I 0.896
RBMS1 Cavia porcellus ENSCPOG00000012310 I 0.896
RBMS1 Ornithorhynchus anatinus ENSOANG00000006166 I 0.889
RBMS1 Equus caballus ENSECAG00000019894 I 0.888
RBMS2 Oryzias latipes ENSORLG00000015426 I 0.888
Rbms1 Rattus norvegicus ENSRNOG00000008482 I 0.888
RBMS1 Vicugna pacos ENSVPAG00000002716 I 0.888
Rbms2 Rattus norvegicus ENSRNOG00000003076 I 0.888
RBMS2 Cavia porcellus ENSCPOG00000008256 I 0.881
RBMS2_BOVIN Bos taurus ENSBTAG00000017830 I 0.881
rbms2 Xenopus tropicalis ENSXETG00000021787 I 0.881
RBMS1 Tupaia belangeri ENSTBEG00000016156 I 0.881
ENSPPYG00000004665 Pongo pygmaeus ENSPPYG00000004665 I 0.881
RBMS2 Callithrix jacchus ENSCJAG00000010803 I 0.881
RBMS2 Pan troglodytes ENSPTRG00000005104 I 0.881
RBMS2 Gasterosteus aculeatus ENSGACG00000000617 I 0.881
RBMS2 Loxodonta africana ENSLAFG00000008251 I 0.881
RBMS2 Homo sapiens ENSG00000076067 I 0.881
RBMS2 Macaca mulatta ENSMMUG00000019330 I 0.881
Rbms1 Mus musculus ENSMUSG00000026970 I 0.881
Rbms2 Mus musculus ENSMUSG00000040043 I 0.881
rbms1a Danio rerio ENSDARG00000074023 I 0.874
RBMS2 Vicugna pacos ENSVPAG00000004022 I 0.873
RBMS2 Danio rerio ENSDARG00000056150 I 0.873
RBMS2 Pteropus vampyrus ENSPVAG00000007616 I 0.873
RBMS2 Oryctolagus cuniculus ENSOCUG00000006073 I 0.873
RBMS2 Sus scrofa ENSSSCG00000000402 I 0.873
Rbms2 Dipodomys ordii ENSDORG00000009231 I 0.873
Ame_R003849 Ailuropoda melanoleuca Ame_R003849 I 0.872
RBMS2 Canis familiaris ENSCAFG00000000134 I 0.872
RBMS1 Gasterosteus aculeatus ENSGACG00000005671 I 0.868
RBMS2 Tetraodon nigroviridis ENSTNIG00000014563 I 0.867
ENSG00000213250 Homo sapiens ENSG00000213250 I 0.867
RBMS2 Takifugu rubripes ENSTRUG00000008492 I 0.867
RBMS1 Takifugu rubripes ENSTRUG00000005466 I 0.866
ENSGGOG00000028247 Gorilla gorilla ENSGGOG00000028247 I 0.858
RBMS3 Takifugu rubripes ENSTRUG00000009128 I 0.858
RBMS2 Macropus eugenii ENSMEUG00000015616 I 0.851
rbms3 Danio rerio ENSDARG00000044574 I 0.851
RBMS3 Gasterosteus aculeatus ENSGACG00000006377 I 0.844
RBMS2 Anolis carolinensis ENSACAG00000016623 I 0.844
RBMS2 Equus caballus ENSECAG00000013470 I 0.844
RBMS2 Gasterosteus aculeatus ENSGACG00000009332 I 0.843
RBMS3 Homo sapiens ENSG00000144642 D 0.843
RBMS3 Tetraodon nigroviridis ENSTNIG00000013818 I 0.843
RBMS2 Oryzias latipes ENSORLG00000007807 I 0.843
RBMS2 Takifugu rubripes ENSTRUG00000006839 I 0.842
RBMS2 Tetraodon nigroviridis ENSTNIG00000015056 I 0.842
RBMS3 Tetraodon nigroviridis ENSTNIG00000013819 I 0.838
RBMS3 Gasterosteus aculeatus ENSGACG00000003155 I 0.837
RBMS3 Loxodonta africana ENSLAFG00000000354 I 0.836
RBMS3 Ochotona princeps ENSOPRG00000006808 I 0.836
RBMS3 Tursiops truncatus ENSTTRG00000006202 I 0.836
RBMS3 Monodelphis domestica ENSMODG00000015125 I 0.836
RBMS3 Pan troglodytes ENSPTRG00000014709 I 0.836
RBMS3 Bos taurus ENSBTAG00000044062 I 0.836
RBMS3 Callithrix jacchus ENSCJAG00000004312 I 0.836
RBMS3 Sorex araneus ENSSARG00000000695 I 0.836
RBMS3 Macaca mulatta ENSMMUG00000004404 I 0.836
RBMS3 Gorilla gorilla ENSGGOG00000007228 I 0.836
RBMS3 Tupaia belangeri ENSTBEG00000005362 I 0.836
RBMS3 Ornithorhynchus anatinus ENSOANG00000010529 I 0.836
RBMS3 Oryctolagus cuniculus ENSOCUG00000004840 I 0.836
RBMS3 Gallus gallus ENSGALG00000011439 I 0.836
RBMS3 Cavia porcellus ENSCPOG00000006457 I 0.836
Rbms3 Mus musculus ENSMUSG00000039607 I 0.836
RBMS3 Oryzias latipes ENSORLG00000005370 I 0.828
RBMS2 Tupaia belangeri ENSTBEG00000009515 I 0.816
RBMS1 Oryzias latipes ENSORLG00000003917 I 0.807
RBMS1 Gasterosteus aculeatus ENSGACG00000015174 I 0.799
RBMS1 Takifugu rubripes ENSTRUG00000017155 I 0.799
RBMS3 Vicugna pacos ENSVPAG00000003842 I 0.793
RBMS1 Tetraodon nigroviridis ENSTNIG00000009477 I 0.791
RBMS3 Sus scrofa ENSSSCG00000011222 I 0.791
D4A288_RAT Rattus norvegicus ENSRNOG00000023845 I 0.788
RBMS2 Tursiops truncatus ENSTTRG00000002117 I 0.784
RBMS3 Myotis lucifugus ENSMLUG00000000659 I 0.776
RBMS1 Microcebus murinus ENSMICG00000008325 I 0.767
RBMS1 Sorex araneus ENSSARG00000011085 I 0.759
RBMS1 Echinops telfairi ENSETEG00000012135 I 0.759
RBMS1 Ochotona princeps ENSOPRG00000012431 I 0.759
RBMS3 Pteropus vampyrus ENSPVAG00000014037 I 0.754
ENSGGOG00000011570 Gorilla gorilla ENSGGOG00000011570 I 0.748
RBMS2 Felis catus ENSFCAG00000012028 I 0.744
rbms1 Xenopus tropicalis ENSXETG00000016204 I 0.741
RBMS2 Dasypus novemcinctus ENSDNOG00000011198 I 0.716
RBMS2 Sorex araneus ENSSARG00000012553 I 0.716
RBMS3 Choloepus hoffmanni ENSCHOG00000000758 I 0.709
RBMS2 Myotis lucifugus ENSMLUG00000000530 I 0.709
RBMS3 Erinaceus europaeus ENSEEUG00000014337 I 0.701