RBMS3 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000005370 T40129_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBMS3
M164_0.6 		Homo sapiens HAUAUA RNAcompete
Ray et al.(2013)
RNCMPT00173 		0.955
RBMS3
M055_0.6 		Homo sapiens MUAUAKM RNAcompete
Ray et al.(2013)
RNCMPT00057 		0.955
RBMS1
M143_0.6 		Homo sapiens KAUAUAS RNAcompete
Ray et al.(2013)
RNCMPT00152 		0.866
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000006771 RRM 53 118
ENSORLP00000006771 RRM 132 198
ENSORLP00000006773 RRM 43 108
ENSORLP00000006773 RRM 122 188

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

117 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
rbms3 Danio rerio ENSDARG00000044574 I 0.970
RBMS3 Gallus gallus ENSGALG00000011439 I 0.970
RBMS3 Gasterosteus aculeatus ENSGACG00000006377 I 0.963
RBMS3 Homo sapiens ENSG00000144642 D 0.962
RBMS3 Cavia porcellus ENSCPOG00000006457 I 0.962
RBMS3 Bos taurus ENSBTAG00000044062 I 0.962
RBMS3 Tupaia belangeri ENSTBEG00000005362 I 0.962
RBMS3 Gorilla gorilla ENSGGOG00000007228 I 0.962
RBMS3 Ornithorhynchus anatinus ENSOANG00000010529 I 0.962
RBMS3 Oryctolagus cuniculus ENSOCUG00000004840 I 0.962
RBMS3 Ochotona princeps ENSOPRG00000006808 I 0.962
Rbms3 Mus musculus ENSMUSG00000039607 I 0.962
RBMS3 Monodelphis domestica ENSMODG00000015125 I 0.962
RBMS3 Loxodonta africana ENSLAFG00000000354 I 0.962
RBMS3 Macaca mulatta ENSMMUG00000004404 I 0.962
RBMS3 Sorex araneus ENSSARG00000000695 I 0.962
RBMS3 Callithrix jacchus ENSCJAG00000004312 I 0.962
RBMS3 Pan troglodytes ENSPTRG00000014709 I 0.962
RBMS3 Takifugu rubripes ENSTRUG00000009128 I 0.955
RBMS3 Tursiops truncatus ENSTTRG00000006202 I 0.955
RBMS3 Tetraodon nigroviridis ENSTNIG00000013819 I 0.949
RBMS3 Tetraodon nigroviridis ENSTNIG00000013818 I 0.940
RBMS3 Gasterosteus aculeatus ENSGACG00000003155 I 0.933
RBMS3 Sus scrofa ENSSSCG00000011222 I 0.917
RBMS3 Vicugna pacos ENSVPAG00000003842 I 0.904
RBMS3 Myotis lucifugus ENSMLUG00000000659 I 0.902
RBMS1 Equus caballus ENSECAG00000019894 I 0.880
RBMS1 Vicugna pacos ENSVPAG00000002716 I 0.880
RBMS2 Oryzias latipes ENSORLG00000015426 I 0.873
Rbms1 Mus musculus ENSMUSG00000026970 I 0.872
RBMS1 Anolis carolinensis ENSACAG00000011984 I 0.867
RBMS1 Gorilla gorilla ENSGGOG00000001264 I 0.866
RBMS1 Loxodonta africana ENSLAFG00000017217 I 0.866
Ame_R017740 Ailuropoda melanoleuca Ame_R017740 I 0.866
RBMS1_BOVIN Bos taurus ENSBTAG00000005180 I 0.866
RBMS2 Gasterosteus aculeatus ENSGACG00000000617 I 0.866
A6ML07_CALJA Callithrix jacchus ENSCJAG00000014861 I 0.866
RBMS1 Homo sapiens ENSG00000153250 D 0.866
RBMS1 Canis familiaris ENSCAFG00000009922 I 0.866
RBMS1 Pteropus vampyrus ENSPVAG00000010429 I 0.866
RBMS1 Pan troglodytes ENSPTRG00000012573 I 0.866
RBMS1 Tursiops truncatus ENSTTRG00000011058 I 0.866
RBMS1 Sus scrofa ENSSSCG00000015888 I 0.866
RBMS1 Monodelphis domestica ENSMODG00000005250 I 0.866
RBMS1 Procavia capensis ENSPCAG00000009673 I 0.866
RBMS1 Macaca mulatta ENSMMUG00000016825 I 0.866
RBMS1 Oryctolagus cuniculus ENSOCUG00000017365 I 0.866
RBMS1 Tarsius syrichta ENSTSYG00000005584 I 0.866
RBMS1 Otolemur garnettii ENSOGAG00000002900 I 0.866
Rbms1 Dipodomys ordii ENSDORG00000007103 I 0.866
RBMS3 Pteropus vampyrus ENSPVAG00000014037 I 0.865
RBMS1 Ornithorhynchus anatinus ENSOANG00000006166 I 0.859
RBMS2 Takifugu rubripes ENSTRUG00000008492 I 0.859
RBMS1 Spermophilus tridecemlineatus ENSSTOG00000012501 I 0.858
RBMS1 Cavia porcellus ENSCPOG00000012310 I 0.858
ENSPPYG00000012879 Pongo pygmaeus ENSPPYG00000012879 I 0.858
Rbms1 Rattus norvegicus ENSRNOG00000008482 I 0.858
RBMS1 Meleagris gallopavo ENSMGAG00000011054 I 0.851
RBMS1 Taeniopygia guttata ENSTGUG00000006606 I 0.851
O73664_CHICK Gallus gallus ENSGALG00000011132 I 0.851
RBMS2 Danio rerio ENSDARG00000056150 I 0.851
RBMS2 Oryzias latipes ENSORLG00000007807 I 0.850
RBMS2 Gasterosteus aculeatus ENSGACG00000009332 I 0.850
RBMS2 Tetraodon nigroviridis ENSTNIG00000014563 I 0.844
rbms2 Xenopus tropicalis ENSXETG00000021787 I 0.843
RBMS1 Tupaia belangeri ENSTBEG00000016156 I 0.843
RBMS2 Cavia porcellus ENSCPOG00000008256 I 0.843
rbms1a Danio rerio ENSDARG00000074023 I 0.837
RBMS2 Homo sapiens ENSG00000076067 I 0.836
RBMS2 Callithrix jacchus ENSCJAG00000010803 I 0.836
RBMS2 Macaca mulatta ENSMMUG00000019330 I 0.836
ENSPPYG00000004665 Pongo pygmaeus ENSPPYG00000004665 I 0.836
RBMS2 Loxodonta africana ENSLAFG00000008251 I 0.836
RBMS2 Pan troglodytes ENSPTRG00000005104 I 0.836
RBMS2 Tetraodon nigroviridis ENSTNIG00000015056 I 0.835
RBMS2 Vicugna pacos ENSVPAG00000004022 I 0.828
AAH43623 Xenopus laevis AAH43623 I 0.828
RBMS1 Danio rerio ENSDARG00000057768 I 0.828
RBMS2 Sus scrofa ENSSSCG00000000402 I 0.828
RBMS2 Equus caballus ENSECAG00000013470 I 0.828
Rbms2 Dipodomys ordii ENSDORG00000009231 I 0.828
RBMS2 Oryctolagus cuniculus ENSOCUG00000006073 I 0.828
Rbms2 Mus musculus ENSMUSG00000040043 I 0.828
RBMS2 Pteropus vampyrus ENSPVAG00000007616 I 0.828
RBMS2 Takifugu rubripes ENSTRUG00000006839 I 0.827
ENSG00000213250 Homo sapiens ENSG00000213250 I 0.822
RBMS1 Tetraodon nigroviridis ENSTNIG00000016496 I 0.822
Ame_R003849 Ailuropoda melanoleuca Ame_R003849 I 0.821
RBMS2 Canis familiaris ENSCAFG00000000134 I 0.821
RBMS2 Anolis carolinensis ENSACAG00000016623 I 0.821
RBMS2_BOVIN Bos taurus ENSBTAG00000017830 I 0.821
Rbms2 Rattus norvegicus ENSRNOG00000003076 I 0.821
ENSGGOG00000028247 Gorilla gorilla ENSGGOG00000028247 I 0.813
RBMS3 Dasypus novemcinctus ENSDNOG00000016645 I 0.812
RBMS3 Macropus eugenii ENSMEUG00000004772 I 0.812
RBMS1 Gasterosteus aculeatus ENSGACG00000005671 I 0.809
RBMS1 Takifugu rubripes ENSTRUG00000005466 I 0.807
RBMS3 Erinaceus europaeus ENSEEUG00000014337 I 0.806
RBMS2 Macropus eugenii ENSMEUG00000015616 I 0.806
RBMS3 Choloepus hoffmanni ENSCHOG00000000758 I 0.805
RBMS1 Oryzias latipes ENSORLG00000016818 I 0.793
RBMS2 Tupaia belangeri ENSTBEG00000009515 I 0.785
RBMS3 Echinops telfairi ENSETEG00000009485 I 0.782
RBMS3 Tarsius syrichta ENSTSYG00000002615 I 0.756
RBMS1 Microcebus murinus ENSMICG00000008325 I 0.739
RBMS1 Oryzias latipes ENSORLG00000003917 I 0.733
RBMS1 Ochotona princeps ENSOPRG00000012431 I 0.731
RBMS1 Sorex araneus ENSSARG00000011085 I 0.731
RBMS1 Echinops telfairi ENSETEG00000012135 I 0.731
D4A288_RAT Rattus norvegicus ENSRNOG00000023845 I 0.728
RBMS3 Procavia capensis ENSPCAG00000006307 I 0.726
RBMS2 Tursiops truncatus ENSTTRG00000002117 I 0.724
RBMS1 Takifugu rubripes ENSTRUG00000017155 I 0.719
ENSGGOG00000011570 Gorilla gorilla ENSGGOG00000011570 I 0.713
RBMS1 Tetraodon nigroviridis ENSTNIG00000009477 I 0.711
RBMS1 Gasterosteus aculeatus ENSGACG00000015174 I 0.711