rbms1a (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000074023 T36219_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBMS1
M143_0.6 		Homo sapiens KAUAUAS RNAcompete
Ray et al.(2013)
RNCMPT00152 		0.846
RBMS3
M164_0.6 		Homo sapiens HAUAUA RNAcompete
Ray et al.(2013)
RNCMPT00173 		0.830
RBMS3
M055_0.6 		Homo sapiens MUAUAKM RNAcompete
Ray et al.(2013)
RNCMPT00057 		0.830
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000064859 RRM 36 102
ENSDARP00000064859 RRM 115 182

Links

Other RRM family RBPs
Other Danio rerio RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBMS1 Danio rerio ENSDARG00000057768 I 0.874
RBMS1 Anolis carolinensis ENSACAG00000011984 I 0.860
RBMS1 Procavia capensis ENSPCAG00000009673 I 0.859
RBMS1 Pteropus vampyrus ENSPVAG00000010429 I 0.859
RBMS1 Sus scrofa ENSSSCG00000015888 I 0.859
RBMS2 Oryzias latipes ENSORLG00000015426 I 0.859
RBMS1 Otolemur garnettii ENSOGAG00000002900 I 0.859
RBMS1 Monodelphis domestica ENSMODG00000005250 I 0.859
RBMS1 Oryctolagus cuniculus ENSOCUG00000017365 I 0.859
RBMS1 Spermophilus tridecemlineatus ENSSTOG00000012501 I 0.859
RBMS1 Macaca mulatta ENSMMUG00000016825 I 0.859
RBMS1 Tursiops truncatus ENSTTRG00000011058 I 0.859
RBMS1_BOVIN Bos taurus ENSBTAG00000005180 I 0.859
RBMS1 Canis familiaris ENSCAFG00000009922 I 0.859
A6ML07_CALJA Callithrix jacchus ENSCJAG00000014861 I 0.859
Ame_R017740 Ailuropoda melanoleuca Ame_R017740 I 0.859
rbms2 Xenopus tropicalis ENSXETG00000021787 I 0.859
RBMS1 Loxodonta africana ENSLAFG00000017217 I 0.859
RBMS1 Vicugna pacos ENSVPAG00000002716 I 0.859
RBMS1 Tarsius syrichta ENSTSYG00000005584 I 0.859
RBMS1 Pan troglodytes ENSPTRG00000012573 I 0.859
Rbms1 Dipodomys ordii ENSDORG00000007103 I 0.859
RBMS1 Homo sapiens ENSG00000153250 D 0.859
RBMS1 Equus caballus ENSECAG00000019894 I 0.859
RBMS1 Gorilla gorilla ENSGGOG00000001264 I 0.859
RBMS1 Tetraodon nigroviridis ENSTNIG00000016496 I 0.853
RBMS1 Gasterosteus aculeatus ENSGACG00000005671 I 0.853
RBMS1 Ornithorhynchus anatinus ENSOANG00000006166 I 0.853
RBMS2 Gasterosteus aculeatus ENSGACG00000000617 I 0.852
O73664_CHICK Gallus gallus ENSGALG00000011132 I 0.852
Rbms2 Mus musculus ENSMUSG00000040043 I 0.852
AAH43623 Xenopus laevis AAH43623 I 0.852
RBMS1 Taeniopygia guttata ENSTGUG00000006606 I 0.852
ENSPPYG00000012879 Pongo pygmaeus ENSPPYG00000012879 I 0.852
RBMS1 Cavia porcellus ENSCPOG00000012310 I 0.852
RBMS1 Meleagris gallopavo ENSMGAG00000011054 I 0.852
RBMS2 Takifugu rubripes ENSTRUG00000008492 I 0.846
RBMS1 Oryzias latipes ENSORLG00000016818 I 0.846
RBMS2 Cavia porcellus ENSCPOG00000008256 I 0.844
RBMS2 Tetraodon nigroviridis ENSTNIG00000014563 I 0.844
RBMS2 Homo sapiens ENSG00000076067 I 0.844
Rbms1 Rattus norvegicus ENSRNOG00000008482 I 0.844
RBMS2 Pan troglodytes ENSPTRG00000005104 I 0.844
RBMS2 Callithrix jacchus ENSCJAG00000010803 I 0.844
RBMS2 Danio rerio ENSDARG00000056150 I 0.844
RBMS2 Macaca mulatta ENSMMUG00000019330 I 0.844
Rbms2 Rattus norvegicus ENSRNOG00000003076 I 0.844
Rbms1 Mus musculus ENSMUSG00000026970 I 0.844
ENSPPYG00000004665 Pongo pygmaeus ENSPPYG00000004665 I 0.844
rbms3 Danio rerio ENSDARG00000044574 I 0.844
RBMS2 Loxodonta africana ENSLAFG00000008251 I 0.844
RBMS1 Takifugu rubripes ENSTRUG00000005466 I 0.838
RBMS2 Tetraodon nigroviridis ENSTNIG00000015056 I 0.837
RBMS2 Vicugna pacos ENSVPAG00000004022 I 0.837
RBMS2 Takifugu rubripes ENSTRUG00000006839 I 0.837
RBMS1 Tupaia belangeri ENSTBEG00000016156 I 0.837
RBMS2 Sus scrofa ENSSSCG00000000402 I 0.837
RBMS2 Pteropus vampyrus ENSPVAG00000007616 I 0.837
RBMS3 Oryzias latipes ENSORLG00000005370 I 0.837
RBMS2 Oryctolagus cuniculus ENSOCUG00000006073 I 0.837
Rbms2 Dipodomys ordii ENSDORG00000009231 I 0.837
ENSG00000213250 Homo sapiens ENSG00000213250 I 0.831
RBMS2_BOVIN Bos taurus ENSBTAG00000017830 I 0.830
Ame_R003849 Ailuropoda melanoleuca Ame_R003849 I 0.830
RBMS2 Oryzias latipes ENSORLG00000007807 I 0.830
RBMS3 Gallus gallus ENSGALG00000011439 I 0.830
RBMS3 Homo sapiens ENSG00000144642 D 0.830
RBMS2 Canis familiaris ENSCAFG00000000134 I 0.830
RBMS2 Equus caballus ENSECAG00000013470 I 0.824
RBMS3 Loxodonta africana ENSLAFG00000000354 I 0.822
RBMS3 Ornithorhynchus anatinus ENSOANG00000010529 I 0.822
RBMS3 Oryctolagus cuniculus ENSOCUG00000004840 I 0.822
RBMS3 Gorilla gorilla ENSGGOG00000007228 I 0.822
RBMS3 Macaca mulatta ENSMMUG00000004404 I 0.822
RBMS3 Monodelphis domestica ENSMODG00000015125 I 0.822
Rbms3 Mus musculus ENSMUSG00000039607 I 0.822
RBMS3 Ochotona princeps ENSOPRG00000006808 I 0.822
RBMS2 Gasterosteus aculeatus ENSGACG00000009332 I 0.822
ENSGGOG00000028247 Gorilla gorilla ENSGGOG00000028247 I 0.822
RBMS3 Sorex araneus ENSSARG00000000695 I 0.822
RBMS3 Pan troglodytes ENSPTRG00000014709 I 0.822
RBMS3 Callithrix jacchus ENSCJAG00000004312 I 0.822
RBMS3 Tupaia belangeri ENSTBEG00000005362 I 0.822
RBMS3 Cavia porcellus ENSCPOG00000006457 I 0.822
RBMS3 Bos taurus ENSBTAG00000044062 I 0.822
RBMS3 Gasterosteus aculeatus ENSGACG00000006377 I 0.816
RBMS2 Anolis carolinensis ENSACAG00000016623 I 0.816
RBMS2 Macropus eugenii ENSMEUG00000015616 I 0.815
RBMS3 Tetraodon nigroviridis ENSTNIG00000013818 I 0.815
RBMS3 Tursiops truncatus ENSTTRG00000006202 I 0.815
RBMS3 Takifugu rubripes ENSTRUG00000009128 I 0.815
RBMS3 Tetraodon nigroviridis ENSTNIG00000013819 I 0.810
RBMS3 Gasterosteus aculeatus ENSGACG00000003155 I 0.809
RBMS2 Tupaia belangeri ENSTBEG00000009515 I 0.801
RBMS3 Vicugna pacos ENSVPAG00000003842 I 0.794
RBMS3 Sus scrofa ENSSSCG00000011222 I 0.793
RBMS1 Gasterosteus aculeatus ENSGACG00000015174 I 0.772
RBMS1 Takifugu rubripes ENSTRUG00000017155 I 0.772
RBMS1 Oryzias latipes ENSORLG00000003917 I 0.765
RBMS1 Tetraodon nigroviridis ENSTNIG00000009477 I 0.765
RBMS3 Myotis lucifugus ENSMLUG00000000659 I 0.763
D4A288_RAT Rattus norvegicus ENSRNOG00000023845 I 0.759
RBMS2 Tursiops truncatus ENSTTRG00000002117 I 0.741
RBMS1 Microcebus murinus ENSMICG00000008325 I 0.726
RBMS3 Pteropus vampyrus ENSPVAG00000014037 I 0.726
rbms1 Xenopus tropicalis ENSXETG00000016204 I 0.719
RBMS1 Ochotona princeps ENSOPRG00000012431 I 0.719
RBMS1 Sorex araneus ENSSARG00000011085 I 0.719
RBMS1 Echinops telfairi ENSETEG00000012135 I 0.719
ENSGGOG00000011570 Gorilla gorilla ENSGGOG00000011570 I 0.715
RBMS3 Macropus eugenii ENSMEUG00000004772 I 0.704
RBMS3 Dasypus novemcinctus ENSDNOG00000016645 I 0.704