RBMS1 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000012310 T35847_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBMS1
M143_0.6 		Homo sapiens KAUAUAS RNAcompete
Ray et al.(2013)
RNCMPT00152 		0.985
RBMS3
M164_0.6 		Homo sapiens HAUAUA RNAcompete
Ray et al.(2013)
RNCMPT00173 		0.859
RBMS3
M055_0.6 		Homo sapiens MUAUAKM RNAcompete
Ray et al.(2013)
RNCMPT00057 		0.859
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000011073 RRM 64 130
ENSCPOP00000011073 RRM 143 209

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBMS1 Procavia capensis ENSPCAG00000009673 I 0.993
RBMS1 Pteropus vampyrus ENSPVAG00000010429 I 0.993
RBMS1 Tarsius syrichta ENSTSYG00000005584 I 0.993
RBMS1 Loxodonta africana ENSLAFG00000017217 I 0.993
RBMS1 Otolemur garnettii ENSOGAG00000002900 I 0.993
RBMS1 Macaca mulatta ENSMMUG00000016825 I 0.993
RBMS1 Oryctolagus cuniculus ENSOCUG00000017365 I 0.993
RBMS1 Tursiops truncatus ENSTTRG00000011058 I 0.993
RBMS1 Sus scrofa ENSSSCG00000015888 I 0.993
Rbms1 Dipodomys ordii ENSDORG00000007103 I 0.993
RBMS1_BOVIN Bos taurus ENSBTAG00000005180 I 0.993
RBMS1 Canis familiaris ENSCAFG00000009922 I 0.993
RBMS1 Gorilla gorilla ENSGGOG00000001264 I 0.985
RBMS1 Homo sapiens ENSG00000153250 D 0.985
RBMS1 Pan troglodytes ENSPTRG00000012573 I 0.985
RBMS1 Monodelphis domestica ENSMODG00000005250 I 0.985
A6ML07_CALJA Callithrix jacchus ENSCJAG00000014861 I 0.985
RBMS1 Spermophilus tridecemlineatus ENSSTOG00000012501 I 0.985
Ame_R017740 Ailuropoda melanoleuca Ame_R017740 I 0.985
RBMS1 Ornithorhynchus anatinus ENSOANG00000006166 I 0.978
ENSPPYG00000012879 Pongo pygmaeus ENSPPYG00000012879 I 0.978
Rbms1 Rattus norvegicus ENSRNOG00000008482 I 0.978
RBMS1 Equus caballus ENSECAG00000019894 I 0.978
RBMS1 Vicugna pacos ENSVPAG00000002716 I 0.978
RBMS1 Taeniopygia guttata ENSTGUG00000006606 I 0.970
O73664_CHICK Gallus gallus ENSGALG00000011132 I 0.970
RBMS1 Tupaia belangeri ENSTBEG00000016156 I 0.970
RBMS1 Meleagris gallopavo ENSMGAG00000011054 I 0.970
RBMS1 Anolis carolinensis ENSACAG00000011984 I 0.963
Rbms1 Mus musculus ENSMUSG00000026970 I 0.955
AAH43623 Xenopus laevis AAH43623 I 0.948
RBMS2 Callithrix jacchus ENSCJAG00000010803 I 0.925
RBMS2 Loxodonta africana ENSLAFG00000008251 I 0.925
RBMS2 Pan troglodytes ENSPTRG00000005104 I 0.925
RBMS2 Macaca mulatta ENSMMUG00000019330 I 0.925
RBMS2 Homo sapiens ENSG00000076067 I 0.925
ENSPPYG00000004665 Pongo pygmaeus ENSPPYG00000004665 I 0.925
RBMS2 Oryctolagus cuniculus ENSOCUG00000006073 I 0.918
RBMS2 Pteropus vampyrus ENSPVAG00000007616 I 0.918
rbms2 Xenopus tropicalis ENSXETG00000021787 I 0.918
RBMS2 Vicugna pacos ENSVPAG00000004022 I 0.918
RBMS2 Sus scrofa ENSSSCG00000000402 I 0.918
RBMS2_BOVIN Bos taurus ENSBTAG00000017830 I 0.918
RBMS2 Oryzias latipes ENSORLG00000015426 I 0.918
Rbms2 Dipodomys ordii ENSDORG00000009231 I 0.918
ENSG00000213250 Homo sapiens ENSG00000213250 I 0.911
RBMS1 Tetraodon nigroviridis ENSTNIG00000016496 I 0.911
RBMS2 Danio rerio ENSDARG00000056150 I 0.910
Rbms2 Mus musculus ENSMUSG00000040043 I 0.910
RBMS2 Cavia porcellus ENSCPOG00000008256 I 0.910
RBMS2 Gasterosteus aculeatus ENSGACG00000000617 I 0.910
ENSGGOG00000028247 Gorilla gorilla ENSGGOG00000028247 I 0.903
Rbms2 Rattus norvegicus ENSRNOG00000003076 I 0.903
RBMS2 Oryzias latipes ENSORLG00000007807 I 0.903
RBMS2 Canis familiaris ENSCAFG00000000134 I 0.903
RBMS2 Takifugu rubripes ENSTRUG00000008492 I 0.896
Ame_R003849 Ailuropoda melanoleuca Ame_R003849 I 0.896
RBMS1 Danio rerio ENSDARG00000057768 I 0.896
RBMS2 Anolis carolinensis ENSACAG00000016623 I 0.889
RBMS2 Tetraodon nigroviridis ENSTNIG00000014563 I 0.889
RBMS2 Equus caballus ENSECAG00000013470 I 0.889
RBMS1 Oryzias latipes ENSORLG00000016818 I 0.881
RBMS3 Tetraodon nigroviridis ENSTNIG00000013818 I 0.881
RBMS2 Macropus eugenii ENSMEUG00000015616 I 0.881
rbms3 Danio rerio ENSDARG00000044574 I 0.881
RBMS3 Gasterosteus aculeatus ENSGACG00000006377 I 0.874
RBMS3 Gasterosteus aculeatus ENSGACG00000003155 I 0.874
RBMS3 Homo sapiens ENSG00000144642 D 0.873
RBMS2 Gasterosteus aculeatus ENSGACG00000009332 I 0.873
RBMS2 Tetraodon nigroviridis ENSTNIG00000015056 I 0.873
RBMS3 Takifugu rubripes ENSTRUG00000009128 I 0.873
RBMS3 Tetraodon nigroviridis ENSTNIG00000013819 I 0.868
RBMS1 Takifugu rubripes ENSTRUG00000005466 I 0.867
RBMS3 Macaca mulatta ENSMMUG00000004404 I 0.866
RBMS3 Cavia porcellus ENSCPOG00000006457 I 0.866
RBMS3 Callithrix jacchus ENSCJAG00000004312 I 0.866
RBMS3 Bos taurus ENSBTAG00000044062 I 0.866
RBMS2 Takifugu rubripes ENSTRUG00000006839 I 0.866
RBMS3 Tupaia belangeri ENSTBEG00000005362 I 0.866
RBMS3 Pan troglodytes ENSPTRG00000014709 I 0.866
RBMS3 Gallus gallus ENSGALG00000011439 I 0.866
RBMS3 Gorilla gorilla ENSGGOG00000007228 I 0.866
RBMS3 Loxodonta africana ENSLAFG00000000354 I 0.866
RBMS3 Oryctolagus cuniculus ENSOCUG00000004840 I 0.866
RBMS3 Ochotona princeps ENSOPRG00000006808 I 0.866
Rbms3 Mus musculus ENSMUSG00000039607 I 0.866
RBMS3 Monodelphis domestica ENSMODG00000015125 I 0.866
RBMS3 Sorex araneus ENSSARG00000000695 I 0.866
RBMS3 Ornithorhynchus anatinus ENSOANG00000010529 I 0.866
RBMS1 Gasterosteus aculeatus ENSGACG00000005671 I 0.860
RBMS2 Tupaia belangeri ENSTBEG00000009515 I 0.860
RBMS3 Tursiops truncatus ENSTTRG00000006202 I 0.858
RBMS3 Oryzias latipes ENSORLG00000005370 I 0.858
rbms1a Danio rerio ENSDARG00000074023 I 0.852
RBMS3 Vicugna pacos ENSVPAG00000003842 I 0.822
RBMS2 Tursiops truncatus ENSTTRG00000002117 I 0.821
RBMS1 Ochotona princeps ENSOPRG00000012431 I 0.821
RBMS1 Echinops telfairi ENSETEG00000012135 I 0.821
RBMS1 Sorex araneus ENSSARG00000011085 I 0.821
RBMS3 Sus scrofa ENSSSCG00000011222 I 0.821
RBMS1 Microcebus murinus ENSMICG00000008325 I 0.813
RBMS3 Myotis lucifugus ENSMLUG00000000659 I 0.806
RBMS1 Takifugu rubripes ENSTRUG00000017155 I 0.800
D4A288_RAT Rattus norvegicus ENSRNOG00000023845 I 0.796
RBMS1 Tetraodon nigroviridis ENSTNIG00000009477 I 0.793
RBMS1 Gasterosteus aculeatus ENSGACG00000015174 I 0.793
RBMS1 Oryzias latipes ENSORLG00000003917 I 0.793
rbms1 Xenopus tropicalis ENSXETG00000016204 I 0.785
RBMS3 Pteropus vampyrus ENSPVAG00000014037 I 0.776
ENSGGOG00000011570 Gorilla gorilla ENSGGOG00000011570 I 0.772
RBMS2 Felis catus ENSFCAG00000012028 I 0.769
RBMS2 Myotis lucifugus ENSMLUG00000000530 I 0.754
RBMS2 Dasypus novemcinctus ENSDNOG00000011198 I 0.748
RBMS2 Sorex araneus ENSSARG00000012553 I 0.741
RBMS2 Choloepus hoffmanni ENSCHOG00000007372 I 0.739
RBMS2 Procavia capensis ENSPCAG00000010311 I 0.731
RBMS3 Choloepus hoffmanni ENSCHOG00000000758 I 0.724
RBMS3 Dasypus novemcinctus ENSDNOG00000016645 I 0.724
RBMS2 Echinops telfairi ENSETEG00000010200 I 0.724
RBMS3 Macropus eugenii ENSMEUG00000004772 I 0.724
RBMS3 Erinaceus europaeus ENSEEUG00000014337 I 0.716
RBMS2 Otolemur garnettii ENSOGAG00000003534 I 0.716
RBMS2 Danio rerio ENSDARG00000044179 I 0.711
RBMS3 Echinops telfairi ENSETEG00000009485 I 0.701