fgenesh1_pg.scaffold_37000136 (Nematostella vectensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pg.scaffold_37000136 T52023_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.752
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.752
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.752
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.752
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.752
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.752
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.752
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.752
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.752
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_37000136 RRM 11 79
fgenesh1_pg.scaffold_37000136 RRM 98 161

Links

Other RRM family RBPs
Other Nematostella vectensis RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.752
AAI23123 Xenopus laevis AAI23123 I 0.752
AAI28932 Xenopus laevis AAI28932 I 0.752
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.752
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.752
AAH42354 Xenopus laevis AAH42354 I 0.752
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.752
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.752
SRSF1 Homo sapiens ENSG00000136450 D 0.744
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.744
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.744
LOC100056763 Equus caballus ENSECAG00000016654 I 0.744
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.744
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.744
srsf1a Danio rerio ENSDARG00000057691 I 0.744
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.744
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.744
ISCW014398 Ixodes scapularis ISCW014398 I 0.744
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.744
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.744
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.744
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.744
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.744
Srsf1 Mus musculus ENSMUSG00000018379 I 0.744
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.744
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.744
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.744
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.744
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.744
CRE13382 Caenorhabditis remanei CRE13382 I 0.744
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.744
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.737
CBG03563 Caenorhabditis briggsae CBG03563 I 0.737
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.737
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.737
CBN06053 Caenorhabditis brenneri CBN06053 I 0.737
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.737
CJA01159 Caenorhabditis japonica CJA01159 I 0.737
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.729
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.729
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.729
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.729
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.729
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.729
SRSF1 Sorex araneus ENSSARG00000010949 I 0.729
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.729
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.729
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.729
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.729
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.722
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.722
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.722
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.722
Smp_185230 Schistosoma mansoni Smp_185230 I 0.722
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.722
AAEL006473 Aedes aegypti AAEL006473 I 0.722
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.722
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.722
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.714
GL22249 Drosophila persimilis FBgn0159841 I 0.714
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.714
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.714
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.714
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.714
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.714
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.711
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.707
AGAP010496 Anopheles gambiae AGAP010496 I 0.707
GF16525 Drosophila ananassae FBgn0093546 I 0.707
GH18077 Drosophila grimshawi FBgn0125545 I 0.707
GE26323 Drosophila yakuba FBgn0243353 I 0.707
GK13511 Drosophila willistoni FBgn0215519 I 0.707
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.701