ENSCING00000007375 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000007375 T35413_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.788
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.788
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.788
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.788
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.788
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.788
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.788
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.788
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.788
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.788
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.701
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.701
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000015147 RRM 11 77
ENSCINP00000015147 RRM 112 175

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.939
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.788
Srsf1 Mus musculus ENSMUSG00000018379 I 0.788
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.788
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.788
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.788
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.788
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.788
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.788
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.788
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.788
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.788
SRSF1 Homo sapiens ENSG00000136450 D 0.788
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.788
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.788
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.788
LOC100056763 Equus caballus ENSECAG00000016654 I 0.788
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.788
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.788
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.780
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.780
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.780
AAI23123 Xenopus laevis AAI23123 I 0.780
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.780
srsf1a Danio rerio ENSDARG00000057691 I 0.780
AAH42354 Xenopus laevis AAH42354 I 0.780
AAI28932 Xenopus laevis AAI28932 I 0.780
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.773
SRSF1 Sorex araneus ENSSARG00000010949 I 0.773
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.773
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.773
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.773
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.773
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.773
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.773
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.773
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.773
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.773
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.773
ISCW014398 Ixodes scapularis ISCW014398 I 0.763
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.761
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.758
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.758
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.758
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.756
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.752
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.750
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.750
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.750
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.750
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.748
CRE13382 Caenorhabditis remanei CRE13382 I 0.748
CJA01159 Caenorhabditis japonica CJA01159 I 0.748
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.742
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.740
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.740
CBN06053 Caenorhabditis brenneri CBN06053 I 0.740
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.733
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.729
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.727
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.727
AAEL006473 Aedes aegypti AAEL006473 I 0.725
CBG03563 Caenorhabditis briggsae CBG03563 I 0.725
Minc06188 Meloidogyne incognita Minc06188 I 0.722
Minc04015 Meloidogyne incognita Minc04015 I 0.722
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.720
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.718
97475 Helobdella robusta 97475 N 0.718
GL22249 Drosophila persimilis FBgn0159841 I 0.718
Smp_185230 Schistosoma mansoni Smp_185230 I 0.714
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.714
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.714
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.710
GK13511 Drosophila willistoni FBgn0215519 I 0.710
GE26323 Drosophila yakuba FBgn0243353 I 0.710
AGAP010496 Anopheles gambiae AGAP010496 I 0.710
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.710
GH18077 Drosophila grimshawi FBgn0125545 I 0.710
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.710
GF16525 Drosophila ananassae FBgn0093546 I 0.710
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.707
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.707
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.707
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.707
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.707
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.707
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.707
Srsf9 Mus musculus ENSMUSG00000029538 I 0.707
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.707
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.707
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.707
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.707
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.707
SRSF9 Homo sapiens ENSG00000111786 D 0.707
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.707
186029 Helobdella robusta 186029 I 0.705
LOAG_10275 Loa loa LOAG_10275 I 0.702