chr1.CM0010.50.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr1.CM0010.50.nc T55780_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0010.50.nc RRM 28 98
chr1.CM0010.50.nc RRM 108 178
chr1.CM0010.50.nc RRM 202 272

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma03g35450.1 Glycine max Glyma03g35450.1 N 0.864
Medtr7g127590 Medicago truncatula Medtr7g127590 N 0.831
MDP0000181657 Malus x domestica MDP0000181657 N 0.779
MDP0000851531 Malus x domestica MDP0000851531 N 0.779
ppa004785m Prunus persica ppa004785m N 0.775
PK04414.1 Cannabis sativa PK04414.1 N 0.761
GSVIVG00036119001 Vitis vinifera GSVIVG00036119001 N 0.757
cassava29630.valid.m1 Manihot esculenta cassava29630.valid.m1 N 0.751
B9IIU5_POPTR Populus trichocarpa POPTR_0016s08010 N 0.751
B9HC85_POPTR Populus trichocarpa POPTR_0006s22890 N 0.737
cassava21693.m1 Manihot esculenta cassava21693.m1 N 0.737
cassava19191.valid.m1 Manihot esculenta cassava19191.valid.m1 N 0.737
cassava21692.m1 Manihot esculenta cassava21692.m1 N 0.737
cassava19192.valid.m1 Manihot esculenta cassava19192.valid.m1 N 0.728
GSVIVG00033857001 Vitis vinifera GSVIVG00033857001 N 0.724
mgf001576m Mimulus guttatus mgf001576m N 0.723
Cucsa.185730 Cucumis sativus Cucsa.185730 N 0.723
28629.m000549 Ricinus communis 28629.m000549 N 0.718
PK05405.1 Cannabis sativa PK05405.1 N 0.709
ppa004677m Prunus persica ppa004677m N 0.709
MDP0000250854 Malus x domestica MDP0000250854 N 0.704