PK04414.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK04414.1 T31636_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK04414.1 RRM 117 187
PK04414.1 RRM 197 267
PK04414.1 RRM 291 361

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000851531 Malus x domestica MDP0000851531 N 0.883
ppa004785m Prunus persica ppa004785m N 0.878
MDP0000181657 Malus x domestica MDP0000181657 N 0.878
cassava19191.valid.m1 Manihot esculenta cassava19191.valid.m1 N 0.831
cassava21692.m1 Manihot esculenta cassava21692.m1 N 0.831
B9IIU5_POPTR Populus trichocarpa POPTR_0016s08010 N 0.831
cassava21693.m1 Manihot esculenta cassava21693.m1 N 0.831
cassava29630.valid.m1 Manihot esculenta cassava29630.valid.m1 N 0.826
B9HC85_POPTR Populus trichocarpa POPTR_0006s22890 N 0.817
cassava19192.valid.m1 Manihot esculenta cassava19192.valid.m1 N 0.817
mgf001576m Mimulus guttatus mgf001576m N 0.812
Glyma03g35450.1 Glycine max Glyma03g35450.1 N 0.798
GSVIVG00036119001 Vitis vinifera GSVIVG00036119001 N 0.794
GSVIVG00033857001 Vitis vinifera GSVIVG00033857001 N 0.785
28629.m000549 Ricinus communis 28629.m000549 N 0.784
chr1.CM0010.50.nc Lotus japonicus chr1.CM0010.50.nc N 0.761
Medtr7g127590 Medicago truncatula Medtr7g127590 N 0.756
Cucsa.185730 Cucumis sativus Cucsa.185730 N 0.756
PK05405.1 Cannabis sativa PK05405.1 N 0.751
PDK_20s1316982g002 Phoenix dactylifera PDK_20s1316982g002 N 0.746
ppa004677m Prunus persica ppa004677m N 0.723
30055.m001569 Ricinus communis 30055.m001569 N 0.718
XM_002876116.1 Arabidopsis lyrata fgenesh2_kg.5__1629__AT3G52660.1 N 0.712
AT3G52660 Arabidopsis thaliana AT3G52660-TAIR-G N 0.707
Glyma11g18940.1 Glycine max Glyma11g18940.1 N 0.704