LOC_Os01g22630 (Oryza sativa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 LOC_Os01g22630 T62224_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os01g22630.1 YTH 392 482
LOC_Os01g22630.2 YTH 392 482

Links

Other YTH family RBPs
Other Oryza sativa RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.945
GRMZM2G056573 Zea mays GRMZM2G056573 N 0.879
SB07G000670 Sorghum bicolor Sb07g000670 N 0.857
GRMZM2G098174 Zea mays GRMZM2G098174 N 0.846
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.769
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.758
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.758
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.736
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.736
ppa018635m Prunus persica ppa018635m N 0.736
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.736
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.736
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.736
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.736
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.736
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.736
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.725
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.725
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.714
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.714
PK02315.1 Cannabis sativa PK02315.1 N 0.714
mgf014143m Mimulus guttatus mgf014143m N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
mgf015583m Mimulus guttatus mgf015583m N 0.714
mgf017987m Mimulus guttatus mgf017987m N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
29889.m003364 Ricinus communis 29889.m003364 N 0.703
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.703
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.703
PK05579.1 Cannabis sativa PK05579.1 N 0.703
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703