Glyma09g03590.1 (Glycine max)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Glyma09g03590.1 T62400_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma09g03590.1 YTH 338 428

Links

Other YTH family RBPs
Other Glycine max RBPs

182 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.923
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.912
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.912
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.912
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.912
ppa018635m Prunus persica ppa018635m N 0.901
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.890
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.868
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.868
MDP0000306387 Malus x domestica MDP0000306387 N 0.868
MDP0000132385 Malus x domestica MDP0000132385 N 0.868
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.868
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.857
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.857
29889.m003364 Ricinus communis 29889.m003364 N 0.846
mgf015583m Mimulus guttatus mgf015583m N 0.835
mgf017987m Mimulus guttatus mgf017987m N 0.835
mgf014143m Mimulus guttatus mgf014143m N 0.835
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.824
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.824
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.824
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.824
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.824
MDP0000231231 Malus x domestica MDP0000231231 N 0.813
MDP0000286471 Malus x domestica MDP0000286471 N 0.813
MDP0000171737 Malus x domestica MDP0000171737 N 0.813
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.813
ppa003664m Prunus persica ppa003664m N 0.813
SB03G031190 Sorghum bicolor Sb03g031190 N 0.813
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.813
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.813
PK02315.1 Cannabis sativa PK02315.1 N 0.813
29955.m001158 Ricinus communis 29955.m001158 N 0.802
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.802
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.802
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.802
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.802
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.802
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.802
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.802
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.791
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.791
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.791
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.791
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.791
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.780
PK23104.1 Cannabis sativa PK23104.1 N 0.780
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.780
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.780
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.780
PK17832.1 Cannabis sativa PK17832.1 N 0.780
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.780
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.780
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.780
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.780
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.780
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.769
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.769
ppa002588m Prunus persica ppa002588m N 0.769
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.769
ppa002483m Prunus persica ppa002483m N 0.769
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.769
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.769
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.769
29929.m004643 Ricinus communis 29929.m004643 N 0.769
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.769
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.769
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.769
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.758
mgf001716m Mimulus guttatus mgf001716m N 0.758
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.758
mgf014829m Mimulus guttatus mgf014829m N 0.758
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.758
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.758
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.758
MDP0000287088 Malus x domestica MDP0000287088 N 0.758
MDP0000617859 Malus x domestica MDP0000617859 N 0.758
MDP0000405927 Malus x domestica MDP0000405927 N 0.758
MDP0000248088 Malus x domestica MDP0000248088 N 0.747
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.747
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
mgf013935m Mimulus guttatus mgf013935m N 0.747
MDP0000552419 Malus x domestica MDP0000552419 N 0.747
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.747
29890.m000285 Ricinus communis 29890.m000285 N 0.736
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.736
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.736
mgf019846m Mimulus guttatus mgf019846m N 0.736
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.736
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.736
mgf019821m Mimulus guttatus mgf019821m N 0.736
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.736
SB01G008170 Sorghum bicolor Sb01g008170 N 0.736
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.736
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.736
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.736
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.736
SB07G006330 Sorghum bicolor Sb07g006330 N 0.736
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.736
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.736
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.736
MDP0000124048 Malus x domestica MDP0000124048 N 0.736
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.736
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.736
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.736
PK05579.1 Cannabis sativa PK05579.1 N 0.736
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.736
MDP0000199885 Malus x domestica MDP0000199885 N 0.736
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.736
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.736
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.736
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.725
mgf009938m Mimulus guttatus mgf009938m N 0.725
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.725
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.725
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.725
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.725
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.725
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.725
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.725
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.725
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.725
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.725
29950.m001140 Ricinus communis 29950.m001140 N 0.725
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.725
MDP0000256033 Malus x domestica MDP0000256033 N 0.725
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.725
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.725
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
MDP0000488248 Malus x domestica MDP0000488248 N 0.725
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.725
ppa002677m Prunus persica ppa002677m N 0.725
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.725
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.725
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.725
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.725
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.725
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.725
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.725
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.725
mgf013853m Mimulus guttatus mgf013853m N 0.725
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.725
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.725
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.725
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.725
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.725
SB06G027960 Sorghum bicolor Sb06g027960 N 0.725
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
PK01736.1 Cannabis sativa PK01736.1 N 0.714
PK26094.1 Cannabis sativa PK26094.1 N 0.714
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
ppa003557m Prunus persica ppa003557m N 0.714
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.714
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.714
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.714
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.714
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.714
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.714
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.714
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.714
29765.m000746 Ricinus communis 29765.m000746 N 0.714
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.714
LOC_Os01g22630 Oryza sativa LOC_Os01g22630 N 0.714
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.714
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.714
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.703
MDP0000718677 Malus x domestica MDP0000718677 N 0.703
MDP0000129009 Malus x domestica MDP0000129009 N 0.703
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.703
PK23716.1 Cannabis sativa PK23716.1 N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.703
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.703