MDP0000306387 (Malus x domestica)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 MDP0000306387 T62540_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000306387 YTH 590 680

Links

Other YTH family RBPs
Other Malus x domestica RBPs

204 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000132385 Malus x domestica MDP0000132385 N 1.000
ppa018635m Prunus persica ppa018635m N 0.956
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.912
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.901
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.901
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.901
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.890
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.890
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.890
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.879
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.879
29889.m003364 Ricinus communis 29889.m003364 N 0.868
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.868
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.868
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.857
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.857
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.846
mgf014143m Mimulus guttatus mgf014143m N 0.846
mgf015583m Mimulus guttatus mgf015583m N 0.846
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.846
PK02315.1 Cannabis sativa PK02315.1 N 0.846
mgf017987m Mimulus guttatus mgf017987m N 0.835
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.835
MDP0000231231 Malus x domestica MDP0000231231 N 0.813
PK23104.1 Cannabis sativa PK23104.1 N 0.813
MDP0000286471 Malus x domestica MDP0000286471 N 0.813
ppa003664m Prunus persica ppa003664m N 0.813
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.813
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.802
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.802
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.802
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.802
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.802
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.802
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.802
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.802
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.791
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.791
PK17832.1 Cannabis sativa PK17832.1 N 0.791
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.791
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.791
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.791
SB07G024500 Sorghum bicolor Sb07g024500 N 0.791
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.791
29955.m001158 Ricinus communis 29955.m001158 N 0.791
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.791
SB03G031190 Sorghum bicolor Sb03g031190 N 0.791
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.791
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.791
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.791
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.791
MDP0000171737 Malus x domestica MDP0000171737 N 0.791
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.791
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.791
MDP0000199885 Malus x domestica MDP0000199885 N 0.780
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.780
29929.m004643 Ricinus communis 29929.m004643 N 0.780
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.780
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.780
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.780
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.780
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.780
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.780
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.780
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.780
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.780
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.780
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.769
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.769
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.769
MDP0000617859 Malus x domestica MDP0000617859 N 0.769
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
MDP0000248088 Malus x domestica MDP0000248088 N 0.769
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.769
MDP0000552419 Malus x domestica MDP0000552419 N 0.769
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.769
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.769
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.769
ppa002483m Prunus persica ppa002483m N 0.769
ppa002588m Prunus persica ppa002588m N 0.769
MDP0000405927 Malus x domestica MDP0000405927 N 0.769
mgf019821m Mimulus guttatus mgf019821m N 0.769
MDP0000287088 Malus x domestica MDP0000287088 N 0.769
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.769
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.769
PK05579.1 Cannabis sativa PK05579.1 N 0.758
29950.m001140 Ricinus communis 29950.m001140 N 0.758
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.758
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.758
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.758
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.758
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.747
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.747
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.747
ppa002677m Prunus persica ppa002677m N 0.747
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.747
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.747
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.747
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.747
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.747
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.736
mgf013935m Mimulus guttatus mgf013935m N 0.736
mgf009938m Mimulus guttatus mgf009938m N 0.736
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.736
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.736
mgf013853m Mimulus guttatus mgf013853m N 0.736
29890.m000285 Ricinus communis 29890.m000285 N 0.736
PK26094.1 Cannabis sativa PK26094.1 N 0.736
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.736
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.736
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.736
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.736
MDP0000718677 Malus x domestica MDP0000718677 N 0.736
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.736
MDP0000488588 Malus x domestica MDP0000488588 N 0.736
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.725
SB01G008170 Sorghum bicolor Sb01g008170 N 0.725
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.725
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.725
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.725
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.725
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.725
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.725
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.725
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.725
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.725
mgf001716m Mimulus guttatus mgf001716m N 0.725
mgf014829m Mimulus guttatus mgf014829m N 0.725
MDP0000129009 Malus x domestica MDP0000129009 N 0.725
MDP0000124048 Malus x domestica MDP0000124048 N 0.725
PK23716.1 Cannabis sativa PK23716.1 N 0.725
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.725
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.725
MDP0000256033 Malus x domestica MDP0000256033 N 0.725
MDP0000488248 Malus x domestica MDP0000488248 N 0.725
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.725
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.725
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.725
ppa003557m Prunus persica ppa003557m N 0.725
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.714
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.714
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.714
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.714
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.714
PK01736.1 Cannabis sativa PK01736.1 N 0.714
MDP0000189157 Malus x domestica MDP0000189157 N 0.714
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.714
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.714
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.714
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.714
mgf019846m Mimulus guttatus mgf019846m N 0.714
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.714
29765.m000746 Ricinus communis 29765.m000746 N 0.714
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.714
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.714
SB01G005500 Sorghum bicolor Sb01g005500 N 0.714
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.714
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.714
SB02G003990 Sorghum bicolor Sb02g003990 N 0.714
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.714
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.714
LOC_Os01g22630 Oryza sativa LOC_Os01g22630 N 0.714
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.714
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.714
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.714
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.714
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.703
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.703
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.703
GRMZM2G098174 Zea mays GRMZM2G098174 N 0.703
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.703
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.703
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.703
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.703
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.703
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.703
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.703