mgf017987m (Mimulus guttatus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 mgf017987m T62429_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf017987m YTH 291 381

Links

Other YTH family RBPs
Other Mimulus guttatus RBPs

159 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf014143m Mimulus guttatus mgf014143m N 0.989
mgf015583m Mimulus guttatus mgf015583m N 0.989
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.890
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.890
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.879
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.879
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.879
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.868
ppa018635m Prunus persica ppa018635m N 0.868
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.868
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.868
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.868
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.868
29889.m003364 Ricinus communis 29889.m003364 N 0.857
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.857
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.846
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.846
PK02315.1 Cannabis sativa PK02315.1 N 0.835
MDP0000132385 Malus x domestica MDP0000132385 N 0.835
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.835
MDP0000306387 Malus x domestica MDP0000306387 N 0.835
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.824
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.824
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.824
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.824
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.824
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.813
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.813
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.791
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.791
SB07G006330 Sorghum bicolor Sb07g006330 N 0.791
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.791
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.780
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.780
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.780
PK23104.1 Cannabis sativa PK23104.1 N 0.780
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.780
SB03G031190 Sorghum bicolor Sb03g031190 N 0.780
ppa003664m Prunus persica ppa003664m N 0.780
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.780
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.780
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.769
29955.m001158 Ricinus communis 29955.m001158 N 0.769
MDP0000405927 Malus x domestica MDP0000405927 N 0.769
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.769
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.769
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.769
MDP0000287088 Malus x domestica MDP0000287088 N 0.769
mgf019821m Mimulus guttatus mgf019821m N 0.769
MDP0000171737 Malus x domestica MDP0000171737 N 0.769
ppa002483m Prunus persica ppa002483m N 0.769
ppa002588m Prunus persica ppa002588m N 0.769
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.769
MDP0000286471 Malus x domestica MDP0000286471 N 0.769
MDP0000617859 Malus x domestica MDP0000617859 N 0.769
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.769
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.769
MDP0000231231 Malus x domestica MDP0000231231 N 0.769
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.769
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.758
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.758
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.758
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.758
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.758
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.758
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.758
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.758
SB07G024500 Sorghum bicolor Sb07g024500 N 0.758
MDP0000248088 Malus x domestica MDP0000248088 N 0.758
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.758
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.758
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.758
PK17832.1 Cannabis sativa PK17832.1 N 0.758
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.758
MDP0000199885 Malus x domestica MDP0000199885 N 0.758
MDP0000552419 Malus x domestica MDP0000552419 N 0.758
29929.m004643 Ricinus communis 29929.m004643 N 0.747
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.747
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.747
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.747
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.747
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.747
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.747
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.747
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.747
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.747
MDP0000256033 Malus x domestica MDP0000256033 N 0.747
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.747
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.747
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.747
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.747
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.736
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.736
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.736
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.736
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.736
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.736
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.736
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.736
29890.m000285 Ricinus communis 29890.m000285 N 0.736
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.736
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.736
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.736
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.736
ppa003557m Prunus persica ppa003557m N 0.725
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.725
mgf013853m Mimulus guttatus mgf013853m N 0.725
mgf014829m Mimulus guttatus mgf014829m N 0.725
MDP0000488248 Malus x domestica MDP0000488248 N 0.725
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.725
PK05579.1 Cannabis sativa PK05579.1 N 0.725
mgf001716m Mimulus guttatus mgf001716m N 0.725
mgf009938m Mimulus guttatus mgf009938m N 0.725
PK26094.1 Cannabis sativa PK26094.1 N 0.725
29765.m000746 Ricinus communis 29765.m000746 N 0.725
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
mgf013935m Mimulus guttatus mgf013935m N 0.714
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.714
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.714
LOC_Os01g22630 Oryza sativa LOC_Os01g22630 N 0.714
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.714
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.714
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.714
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.714
PK01736.1 Cannabis sativa PK01736.1 N 0.714
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.703
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.703
mgf019846m Mimulus guttatus mgf019846m N 0.703
MDP0000488588 Malus x domestica MDP0000488588 N 0.703
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703