PDK_20s1906441g001 (Phoenix dactylifera)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 PDK_20s1906441g001 T62558_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1906441g001 YTH 405 486

Links

Other YTH family RBPs
Other Phoenix dactylifera RBPs

51 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000199885 Malus x domestica MDP0000199885 N 0.841
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.817
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.795
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.780
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.780
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.780
mgf017987m Mimulus guttatus mgf017987m N 0.769
mgf015583m Mimulus guttatus mgf015583m N 0.769
mgf014143m Mimulus guttatus mgf014143m N 0.769
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.758
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.758
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.758
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.758
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.758
ppa018635m Prunus persica ppa018635m N 0.758
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.758
MDP0000306387 Malus x domestica MDP0000306387 N 0.747
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.747
29889.m003364 Ricinus communis 29889.m003364 N 0.747
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.747
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.747
MDP0000132385 Malus x domestica MDP0000132385 N 0.747
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.736
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.736
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.736
MDP0000299155 Malus x domestica MDP0000299155 N 0.732
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.725
PK02315.1 Cannabis sativa PK02315.1 N 0.725
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.718
MDP0000231231 Malus x domestica MDP0000231231 N 0.714
ppa003664m Prunus persica ppa003664m N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.714
MDP0000286471 Malus x domestica MDP0000286471 N 0.714
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.714
PK23104.1 Cannabis sativa PK23104.1 N 0.714
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.714
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.713
30169.m006347 Ricinus communis 30169.m006347 N 0.707
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.703
MDP0000171737 Malus x domestica MDP0000171737 N 0.703
LOC_Os01g22630 Oryza sativa LOC_Os01g22630 N 0.703
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.703
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.703
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.703
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.703
GRMZM2G098174 Zea mays GRMZM2G098174 N 0.703
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.703
SB07G000670 Sorghum bicolor Sb07g000670 N 0.700