CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PDK_20s1906441g001
(
Phoenix dactylifera
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
PDK_20s1906441g001
T62558_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1906441g001
YTH
405
486
LFFSVNASGQFCGVAEMTGPVDFHKDMDFWQQDKWTGSFPVRWHIIKDVPNSSFRHIILENNENKPVTHSRDTQEFEYLSSF
Links
Other
YTH
family RBPs
Other
Phoenix dactylifera
RBPs
51 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000199885
Malus x domestica
MDP0000199885
N
0.841
LjT10H22.120.nd
Lotus japonicus
LjT10H22.120.nd
N
0.817
LjSGA_011466.1
Lotus japonicus
LjSGA_011466.1
N
0.795
cassava42993.valid.m1
Manihot esculenta
cassava42993.valid.m1
N
0.780
PDK_20s1352821g002
Phoenix dactylifera
PDK_20s1352821g002
N
0.780
cassava42992.valid.m1
Manihot esculenta
cassava42992.valid.m1
N
0.780
mgf017987m
Mimulus guttatus
mgf017987m
N
0.769
mgf015583m
Mimulus guttatus
mgf015583m
N
0.769
mgf014143m
Mimulus guttatus
mgf014143m
N
0.769
Glyma17g04270.1
Glycine max
Glyma17g04270.1
N
0.758
LOC_Os03g20180
Oryza sativa
LOC_Os03g20180
N
0.758
chr6.LjT36O06.80.nd
Lotus japonicus
chr6.LjT36O06.80.nd
N
0.758
GSVIVG00017649001
Vitis vinifera
GSVIVG00017649001
N
0.758
BGIOSIBCE010884
Oryza indica
BGIOSIBCE010884
N
0.758
ppa018635m
Prunus persica
ppa018635m
N
0.758
BRADI1G64100
Brachypodium distachyon
BRADI1G64100
N
0.758
MDP0000306387
Malus x domestica
MDP0000306387
N
0.747
B9HX84_POPTR
Populus trichocarpa
POPTR_0010s16210
N
0.747
29889.m003364
Ricinus communis
29889.m003364
N
0.747
B9HII9_POPTR
Populus trichocarpa
POPTR_0008s09960
N
0.747
Medtr8g134440
Medicago truncatula
Medtr8g134440
N
0.747
MDP0000132385
Malus x domestica
MDP0000132385
N
0.747
Cucsa.135220
Cucumis sativus
Cucsa.135220
N
0.736
Medtr2g036990
Medicago truncatula
Medtr2g036990
N
0.736
Glyma07g36110.1
Glycine max
Glyma07g36110.1
N
0.736
MDP0000299155
Malus x domestica
MDP0000299155
N
0.732
XM_002894050.1
Arabidopsis lyrata
fgenesh2_kg.1__3903__AT1G48110.2
N
0.725
Glyma15g14490.1
Glycine max
Glyma15g14490.1
N
0.725
PK02315.1
Cannabis sativa
PK02315.1
N
0.725
ECT7
Arabidopsis thaliana
AT1G48110-TAIR-G
N
0.725
PDK_20s1441394g001
Phoenix dactylifera
PDK_20s1441394g001
N
0.718
MDP0000231231
Malus x domestica
MDP0000231231
N
0.714
ppa003664m
Prunus persica
ppa003664m
N
0.714
BRADI2G46590
Brachypodium distachyon
BRADI2G46590
N
0.714
ECT6
Arabidopsis thaliana
AT3G17330-TAIR-G
N
0.714
MDP0000286471
Malus x domestica
MDP0000286471
N
0.714
XM_002885156.1
Arabidopsis lyrata
Al_scaffold_0003_1823
N
0.714
PK23104.1
Cannabis sativa
PK23104.1
N
0.714
Glyma09g03590.1
Glycine max
Glyma09g03590.1
N
0.714
ECT5
Arabidopsis thaliana
AT3G13060-TAIR-G
N
0.713
30169.m006347
Ricinus communis
30169.m006347
N
0.707
BGIOSIBCE003171
Oryza indica
BGIOSIBCE003171
N
0.703
MDP0000171737
Malus x domestica
MDP0000171737
N
0.703
LOC_Os01g22630
Oryza sativa
LOC_Os01g22630
N
0.703
gw1.181.55.1
Physcomitrella patens
gw1.181.55.1
N
0.703
cassava17771.valid.m1
Manihot esculenta
cassava17771.valid.m1
N
0.703
BRADI2G12380
Brachypodium distachyon
BRADI2G12380
N
0.703
LOC_Os01g48790
Oryza sativa
LOC_Os01g48790
N
0.703
GRMZM2G098174
Zea mays
GRMZM2G098174
N
0.703
cassava17772.valid.m1
Manihot esculenta
cassava17772.valid.m1
N
0.703
SB07G000670
Sorghum bicolor
Sb07g000670
N
0.700