PK02315.1 (Cannabis sativa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 PK02315.1 T61906_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK02315.1 YTH 437 527

Links

Other YTH family RBPs
Other Cannabis sativa RBPs

132 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa018635m Prunus persica ppa018635m N 0.890
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.879
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.879
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.868
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.868
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.868
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.857
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.857
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.857
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.857
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.846
MDP0000132385 Malus x domestica MDP0000132385 N 0.846
mgf015583m Mimulus guttatus mgf015583m N 0.846
MDP0000306387 Malus x domestica MDP0000306387 N 0.846
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.846
29889.m003364 Ricinus communis 29889.m003364 N 0.846
mgf014143m Mimulus guttatus mgf014143m N 0.846
ppa003664m Prunus persica ppa003664m N 0.835
mgf017987m Mimulus guttatus mgf017987m N 0.835
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.835
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.824
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.824
MDP0000286471 Malus x domestica MDP0000286471 N 0.824
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.824
MDP0000231231 Malus x domestica MDP0000231231 N 0.824
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.813
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.813
29955.m001158 Ricinus communis 29955.m001158 N 0.813
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.813
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.813
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.813
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.813
MDP0000171737 Malus x domestica MDP0000171737 N 0.802
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.802
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.802
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.802
PK23104.1 Cannabis sativa PK23104.1 N 0.802
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.802
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.802
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.802
SB07G006330 Sorghum bicolor Sb07g006330 N 0.791
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.791
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.791
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.791
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.791
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.791
SB03G031190 Sorghum bicolor Sb03g031190 N 0.791
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.791
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.791
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.791
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.791
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.780
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.780
mgf001716m Mimulus guttatus mgf001716m N 0.769
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.769
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.769
mgf014829m Mimulus guttatus mgf014829m N 0.769
mgf019821m Mimulus guttatus mgf019821m N 0.758
MDP0000199885 Malus x domestica MDP0000199885 N 0.758
MDP0000405927 Malus x domestica MDP0000405927 N 0.758
MDP0000617859 Malus x domestica MDP0000617859 N 0.758
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.758
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.758
MDP0000287088 Malus x domestica MDP0000287088 N 0.758
ppa002483m Prunus persica ppa002483m N 0.747
ppa002588m Prunus persica ppa002588m N 0.747
MDP0000552419 Malus x domestica MDP0000552419 N 0.747
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.747
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.747
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.747
MDP0000256033 Malus x domestica MDP0000256033 N 0.747
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.747
29950.m001140 Ricinus communis 29950.m001140 N 0.747
MDP0000248088 Malus x domestica MDP0000248088 N 0.747
ppa003557m Prunus persica ppa003557m N 0.736
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.736
MDP0000488248 Malus x domestica MDP0000488248 N 0.736
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.736
mgf019846m Mimulus guttatus mgf019846m N 0.736
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.736
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.736
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.736
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.736
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.736
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.736
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.736
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.736
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.736
PK17832.1 Cannabis sativa PK17832.1 N 0.736
PK26094.1 Cannabis sativa PK26094.1 N 0.736
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.736
SB07G024500 Sorghum bicolor Sb07g024500 N 0.736
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.736
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.736
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.725
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.725
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.725
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.725
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.725
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.725
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.725
PK01736.1 Cannabis sativa PK01736.1 N 0.725
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.725
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.725
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.725
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.725
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.725
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.725
PK05579.1 Cannabis sativa PK05579.1 N 0.725
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.714
29765.m000746 Ricinus communis 29765.m000746 N 0.714
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.714
LOC_Os01g22630 Oryza sativa LOC_Os01g22630 N 0.714
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.714
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.714
29929.m004643 Ricinus communis 29929.m004643 N 0.714
SB06G027960 Sorghum bicolor Sb06g027960 N 0.714
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.714
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.714
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.714
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.703
mgf013853m Mimulus guttatus mgf013853m N 0.703
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.703
mgf009938m Mimulus guttatus mgf009938m N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703
mgf013935m Mimulus guttatus mgf013935m N 0.703
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.703
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.703
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.703