PK05579.1 (Cannabis sativa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 PK05579.1 T61907_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK05579.1 YTH 434 524

Links

Other YTH family RBPs
Other Cannabis sativa RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.912
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.901
29890.m000285 Ricinus communis 29890.m000285 N 0.901
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.890
ppa002677m Prunus persica ppa002677m N 0.890
MDP0000189157 Malus x domestica MDP0000189157 N 0.879
mgf019821m Mimulus guttatus mgf019821m N 0.857
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.846
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.846
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.813
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.813
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.813
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.813
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.802
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.802
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.802
PK17832.1 Cannabis sativa PK17832.1 N 0.802
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.802
MDP0000617859 Malus x domestica MDP0000617859 N 0.791
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.791
MDP0000405927 Malus x domestica MDP0000405927 N 0.791
SB07G024500 Sorghum bicolor Sb07g024500 N 0.791
MDP0000299155 Malus x domestica MDP0000299155 N 0.791
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.791
MDP0000287088 Malus x domestica MDP0000287088 N 0.791
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.791
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.791
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.791
ppa002588m Prunus persica ppa002588m N 0.791
ppa002483m Prunus persica ppa002483m N 0.791
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.791
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.780
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.780
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.780
MDP0000552419 Malus x domestica MDP0000552419 N 0.780
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.780
MDP0000248088 Malus x domestica MDP0000248088 N 0.780
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.780
29929.m004643 Ricinus communis 29929.m004643 N 0.780
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.780
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.780
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.780
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.769
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.769
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.769
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.769
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.769
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.769
ppa018635m Prunus persica ppa018635m N 0.769
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.769
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.758
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.758
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.758
SB06G027960 Sorghum bicolor Sb06g027960 N 0.758
ppa003664m Prunus persica ppa003664m N 0.758
MDP0000132385 Malus x domestica MDP0000132385 N 0.758
MDP0000306387 Malus x domestica MDP0000306387 N 0.758
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.758
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.758
MDP0000286471 Malus x domestica MDP0000286471 N 0.747
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.747
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.747
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.747
MDP0000231231 Malus x domestica MDP0000231231 N 0.747
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.747
SB01G008170 Sorghum bicolor Sb01g008170 N 0.747
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.747
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.747
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.747
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.747
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.747
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.747
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.747
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.747
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.747
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.747
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.747
29889.m003364 Ricinus communis 29889.m003364 N 0.747
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.747
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.736
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.736
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.736
PK23104.1 Cannabis sativa PK23104.1 N 0.736
PK01736.1 Cannabis sativa PK01736.1 N 0.736
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.736
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.736
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.736
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.736
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.736
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.736
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.736
SB03G031190 Sorghum bicolor Sb03g031190 N 0.736
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.725
mgf017987m Mimulus guttatus mgf017987m N 0.725
mgf015583m Mimulus guttatus mgf015583m N 0.725
mgf014143m Mimulus guttatus mgf014143m N 0.725
29955.m001158 Ricinus communis 29955.m001158 N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.725
PK02315.1 Cannabis sativa PK02315.1 N 0.725
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.725
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.725
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.714
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.714
PK26094.1 Cannabis sativa PK26094.1 N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.714
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.714
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.714
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.714
mgf013853m Mimulus guttatus mgf013853m N 0.714
mgf019846m Mimulus guttatus mgf019846m N 0.714
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.714
SB02G003990 Sorghum bicolor Sb02g003990 N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.714
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.714
MDP0000488588 Malus x domestica MDP0000488588 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
cassava16277.m1 Manihot esculenta cassava16277.m1 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703
29950.m001140 Ricinus communis 29950.m001140 N 0.703
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.703
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.703
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.703
LOC_Os01g22630 Oryza sativa LOC_Os01g22630 N 0.703
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.703
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
mgf013935m Mimulus guttatus mgf013935m N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.703