ENSGACG00000013400 (Gasterosteus aculeatus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSGACG00000013400 T02699_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.759
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.759
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.759
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.759
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.759
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.759
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.759
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000017708 CCCH ZF 76 102
ENSGACP00000017708 CCCH ZF 114 140

Links

Other CCCH ZF family RBPs
Other Gasterosteus aculeatus RBPs

164 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
0300010273 Ostreococcus tauri 0300010273 I 0.741
AAD24208 Xenopus laevis AAD24208 I 0.870
AAD24209 Xenopus laevis AAD24209 I 0.870
AAH44086 Xenopus laevis AAH44086 I 0.889
AAH84197 Xenopus laevis AAH84197 I 0.870
AAH84221 Xenopus laevis AAH84221 I 0.870
AAI00163 Xenopus laevis AAI00163 I 0.870
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.722
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.722
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.889
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.907
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.870
au.g10607_t1 Chlamydomonas reinhardtii au.g10607_t1 N 0.000
BAC54909 Xenopus laevis BAC54909 I 0.870
CC1G_04402 Coprinopsis cinerea CC1G_04402 N 0.704
CMA121C Cyanidioschyzon merolae CMA121C N 0.000
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.704
ECU01_0830 Encephalitozoon cuniculi ECU01_0830 N 0.000
EDI_287240 Entamoeba dispar EDI_287240 N 0.704
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.722
EHI_008770 Entamoeba histolytica EHI_008770 N 0.704
Ein01_0730 Encephalitozoon intestinalis Ein01_0730 N 0.000
EIN_295900 Entamoeba invadens EIN_295900 N 0.000
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.870
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.889
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.907
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.870
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.907
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.870
Q4H2G7_CIOIN Ciona intestinalis ENSCING00000014446 I 0.815
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.907
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.870
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.889
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.870
ENSCSAVG00000002923 Ciona savignyi ENSCSAVG00000002923 I 0.815
zfp36l1a Danio rerio ENSDARG00000016154 I 0.870
zfp36l1b Danio rerio ENSDARG00000021443 I 0.870
zfp36l2 Danio rerio ENSDARG00000021806 I 0.889
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 1.000
ZFP36 Danio rerio ENSDARG00000044395 I 0.741
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.870
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.870
LOC100063597 Equus caballus ENSECAG00000018860 I 0.870
ZFP36L2 Homo sapiens ENSG00000152518 I 0.907
ZFP36L1 Homo sapiens ENSG00000185650 I 0.870
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.759
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.870
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.907
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.907
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.870
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.870
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.907
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.907
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.907
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.907
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.870
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.907
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.852
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.889
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.870
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.944
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.759
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.870
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.870
ZFP36L2 Procavia capensis ENSPCAG00000010765 I 0.889
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.870
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.907
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.907
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.870
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.870
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.907
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.833
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.870
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.870
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.907
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.907
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.870
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.907
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.870
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.778
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.852
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.889
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.926
ENSTRUG00000003178 Takifugu rubripes ENSTRUG00000003178 I 0.907
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.907
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.870
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.870
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.870
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.907
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.889
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.870
estExt_fgenesh1_pg.C_3580026 Physcomitrella patens estExt_fgenesh1_pg.C_3580026 N 0.000
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.741
estExt_fgenesh2_kg.C_10578 Serpula lacrymans estExt_fgenesh2_kg.C_10578 N 0.704
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.741
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.852
estExt_fgeneshDP_kg.C_230001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_230001 I 0.704
estExt_genemark.C_30534 Pleurotus ostreatus estExt_genemark.C_30534 N 0.704
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.907
e_gw1.1.2331.1 Agaricus bisporus e_gw1.1.2331.1 N 0.722
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.870
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.704
fgenesh1_pg.C_scaffold_11000103 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000103 N 0.722
fgenesh1_pg.C_scaffold_4000193 Sporobolomyces roseus fgenesh1_pg.C_scaffold_4000193 N 0.000
fgenesh1_pg.scaffold_257000036 Physcomitrella patens fgenesh1_pg.scaffold_257000036 N 0.000
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.704
fgenesh2_pg.scaffold_13000206 Monosiga brevicollis fgenesh2_pg.scaffold_13000206 N 0.000
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.722
fgeneshPB_pg.44__45 Phycomyces blakesleeanus fgeneshPB_pg.44__45 N 0.000
gw1.1.1133.1 Micromonas pusilla gw1.1.1133.1 N 0.704
gw1.14.301.1 Coccomyxa C 169 gw1.14.301.1 N 0.000
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.741
gw1.30.59.1 Lottia gigantea gw1.30.59.1 N 0.815
gw1.42.93.1 Daphnia pulex gw1.42.93.1 N 0.852
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.815
gw1.57.55.1 Melampsora laricis populina gw1.57.55.1 N 0.000
gw1.8.374.1 Chlorella NC64A gw1.8.374.1 N 0.000
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.741
PTTG_07763 Puccinia triticina PTTG_07763 N 0.000
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.889
Q805B4 Xenopus laevis Q805B4 I 0.870
RO3G_05094 Rhizopus oryzae RO3G_05094 N 0.000
RO3G_10992 Rhizopus oryzae RO3G_10992 N 0.000
SPPG_04528 Spizellomyces punctatus SPPG_04528 N 0.000
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.833
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.833
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.833
XP_002159721.1 Hydra magnipapillata XP_002159721.1 N 0.852
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.833