CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Q68FR1_RAT
(
Rattus norvegicus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSRNOG00000009280
T03313_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000013124
CCCH ZF
56
81
TKQVTCRYFMHGVCKEGDNCRYSHDL
ENSRNOP00000013124
CCCH ZF
85
110
PYGVVCKYFQRGYCVYGDRCRYEHSK
ENSRNOP00000013124
CCCH ZF
210
234
EKQLCPYAAVGECRYGENCVYLHGD
ENSRNOP00000013124
CCCH ZF
367
392
NKACRYFDEGRGSCPFGGNCFYKHAY
Links
Other
CCCH ZF
family RBPs
Other
Rattus norvegicus
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH74368
Xenopus laevis
AAH74368
N
0.779
Ame_R001963
Ailuropoda melanoleuca
Ame_R001963
N
0.913
MKRN1
Anolis carolinensis
ENSACAG00000010934
N
0.875
ENSCAFG00000003953
Canis familiaris
ENSCAFG00000003953
N
0.904
MKRN1
Choloepus hoffmanni
ENSCHOG00000011015
N
0.971
MKRN1
Callithrix jacchus
ENSCJAG00000004068
N
0.837
ENSCPOG00000000948
Cavia porcellus
ENSCPOG00000000948
N
0.933
mkrn1
Danio rerio
ENSDARG00000041665
N
0.764
LOC100065893
Equus caballus
ENSECAG00000017929
N
0.913
MKRN1
Felis catus
ENSFCAG00000013043
N
0.904
MKRN1
Homo sapiens
ENSG00000133606
N
0.962
MKRN1
Gasterosteus aculeatus
ENSGACG00000019227
N
0.755
Q9PTI4_CHICK
Gallus gallus
ENSGALG00000012852
N
0.865
ENSGGOG00000023977
Gorilla gorilla
ENSGGOG00000023977
N
0.962
MKRN1
Loxodonta africana
ENSLAFG00000018408
N
0.981
MKRN1_MACEU
Macropus eugenii
ENSMEUG00000007399
N
0.875
MKRN1
Meleagris gallopavo
ENSMGAG00000013208
N
0.798
MKRN1
Microcebus murinus
ENSMICG00000002114
N
0.952
ENSMMUG00000001017
Macaca mulatta
ENSMMUG00000001017
N
0.837
MKRN1
Macaca mulatta
ENSMMUG00000010420
N
0.904
ENSMODG00000013686
Monodelphis domestica
ENSMODG00000013686
N
0.875
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.981
ENSOCUG00000010180
Oryctolagus cuniculus
ENSOCUG00000010180
N
0.904
ENSOGAG00000009877
Otolemur garnettii
ENSOGAG00000009877
N
0.837
MKRN1
Ochotona princeps
ENSOPRG00000010353
N
0.904
MKRN1
Oryzias latipes
ENSORLG00000012765
N
0.817
MKRN1
Procavia capensis
ENSPCAG00000014683
N
0.846
ENSPPYG00000018057
Pongo pygmaeus
ENSPPYG00000018057
N
0.894
ENSPPYG00000020255
Pongo pygmaeus
ENSPPYG00000020255
N
0.865
XR_024878.1
Pan troglodytes
ENSPTRG00000019766
N
0.952
MKRN1
Sorex araneus
ENSSARG00000013683
N
0.837
MKRN1
Sus scrofa
ENSSSCG00000016498
N
0.971
MKRN1
Taeniopygia guttata
ENSTGUG00000011669
N
0.779
MKRN1
Tetraodon nigroviridis
ENSTNIG00000007231
N
0.745
NP_001072050.1
Takifugu rubripes
ENSTRUG00000012057
N
0.755
MKRN1
Tarsius syrichta
ENSTSYG00000009996
N
0.846
MKRN1
Tursiops truncatus
ENSTTRG00000009528
N
0.971
Q6GLT5
Xenopus laevis
Q6GLT5
N
0.779