GRMZM2G175419 (Zea mays)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		GRMZM2G175419 T07614_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G175419_P01 RRM 13 75
GRMZM2G175419_P01 CCHC ZF 102 119
GRMZM2G175419_P01 CCHC ZF 124 141
GRMZM2G175419_P04 RRM 16 65
GRMZM2G175419_P04 CCHC ZF 92 109
GRMZM2G175419_P04 CCHC ZF 114 131

Links

Other CCHC ZF,RRM family RBPs
Other Zea mays RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29805.m001527 Ricinus communis 29805.m001527 N 0.848
AC235022_4 Medicago truncatula AC235022_4 N 0.808
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.828
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.848
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 0.758
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.909
BRADI2G00370 Brachypodium distachyon BRADI2G00370 N 0.788
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.808
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.939
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.848
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.848
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.808
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.848
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.848
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.828
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.828
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.828
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.828
GRMZM2G099186 Zea mays GRMZM2G099186 N 0.949
GRMZM2G099317 Zea mays GRMZM2G099317 N 0.899
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.889
GSVIVG00025580001 Vitis vinifera GSVIVG00025580001 N 0.709
GSVIVG00032633001 Vitis vinifera GSVIVG00032633001 N 0.838
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.848
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.788
LOC_Os01g06290 Oryza sativa LOC_Os01g06290 N 0.758
LOC_Os03g17710 Oryza sativa LOC_Os03g17710 N 0.919
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.909
mgf009930m Mimulus guttatus mgf009930m N 0.828
mgf016290m Mimulus guttatus mgf016290m N 0.791
PK26144.1 Cannabis sativa PK26144.1 N 0.788
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.818
B9IIW9_POPTR Populus trichocarpa POPTR_0016s08250 N 0.828
ppa009074m Prunus persica ppa009074m N 0.828
ppa009294m Prunus persica ppa009294m N 0.788
ppa009671m Prunus persica ppa009671m N 0.721
SB03G005500 Sorghum bicolor Sb03g005500 N 0.747
SB09G001910 Sorghum bicolor Sb09g001910 N 0.899
Sb09g001920 Sorghum bicolor Sb09g001920 N 0.949