CID9 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT3G14450-TAIR-G T32733_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G14450.1-P RRM 143 210
AT3G14450.1-P RRM 240 308

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29485.m000140 Ricinus communis 29485.m000140 N 0.781
29650.m000268 Ricinus communis 29650.m000268 N 0.810
30068.m002593 Ricinus communis 30068.m002593 N 0.766
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.818
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.774
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.832
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.737
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.759
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.723
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.759
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.723
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.737
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.737
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.745
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.854
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.788
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.788
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.788
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.788
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.788
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.788
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.788
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.774
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.766
Cucsa.071470 Cucumis sativus Cucsa.071470 N 0.746
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.737
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.788
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.788
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.774
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.978
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.752
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.774
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.759
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.745
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.774
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.825
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.810
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.737
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.708
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.752
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.701
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.715
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.752
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.818
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.796
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.788
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.796
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.796
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.766
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.759
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.737
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.759
MDP0000233630 Malus x domestica MDP0000233630 N 0.766
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.759
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.737
mgf005336m Mimulus guttatus mgf005336m N 0.701
mgf012896m Mimulus guttatus mgf012896m N 0.774
mgf013366m Mimulus guttatus mgf013366m N 0.796
mgf014445m Mimulus guttatus mgf014445m N 0.745
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.708
PK04894.1 Cannabis sativa PK04894.1 N 0.781
PK12463.1 Cannabis sativa PK12463.1 N 0.796
PK28889.1 Cannabis sativa PK28889.1 N 0.803
ppa006808m Prunus persica ppa006808m N 0.781
ppa009298m Prunus persica ppa009298m N 0.832
SB03G002180 Sorghum bicolor Sb03g002180 N 0.708
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.752
SB07G001560 Sorghum bicolor Sb07g001560 N 0.752
SB10G021290 Sorghum bicolor Sb10g021290 N 0.730