BGIOSIBCE028840 (Oryza indica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIOSIBCE028840 T33060_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE028840 RRM 130 200
BGIOSIBCE028840 RRM 224 294

Links

Other RRM family RBPs
Other Oryza indica RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30147.m013835 Ricinus communis 30147.m013835 N 0.711
ATRBP31 Arabidopsis thaliana AT4G24770-TAIR-G N 0.718
BRADI3G42700 Brachypodium distachyon BRADI3G42700 N 0.915
BRADI4G38260 Brachypodium distachyon BRADI4G38260 N 0.838
cassava30233.valid.m1 Manihot esculenta cassava30233.valid.m1 N 0.725
cassava511.valid.m1 Manihot esculenta cassava511.valid.m1 N 0.739
cassava512.valid.m1 Manihot esculenta cassava512.valid.m1 N 0.711
Cucsa.196330 Cucumis sativus Cucsa.196330 N 0.718
XM_002867599.1 Arabidopsis lyrata fgenesh2_kg.7__1798__AT4G24770.1 N 0.725
Glyma06g18470.1 Glycine max Glyma06g18470.1 N 0.725
Glyma17g13470.1 Glycine max Glyma17g13470.1 N 0.704
GRMZM2G011129 Zea mays GRMZM2G011129 N 0.838
GRMZM2G123234 Zea mays GRMZM2G123234 N 0.915
GRMZM2G158462 Zea mays GRMZM2G158462 N 0.908
GSVIVG00007596001 Vitis vinifera GSVIVG00007596001 N 0.732
GSVIVG00032361001 Vitis vinifera GSVIVG00032361001 N 0.754
LOC_Os08g44290 Oryza sativa LOC_Os08g44290 N 1.000
LOC_Os09g39180 Oryza sativa LOC_Os09g39180 N 0.817
MDP0000218595 Malus x domestica MDP0000218595 N 0.775
MDP0000296631 Malus x domestica MDP0000296631 N 0.704
MDP0000299693 Malus x domestica MDP0000299693 N 0.704
MDP0000528470 Malus x domestica MDP0000528470 N 0.746
MDP0000919119 Malus x domestica MDP0000919119 N 0.761
mgf001484m Mimulus guttatus mgf001484m N 0.746
mgf008267m Mimulus guttatus mgf008267m N 0.718
mgf009747m Mimulus guttatus mgf009747m N 0.711
PK05280.1 Cannabis sativa PK05280.1 N 0.746
A9PG08_POPTR Populus trichocarpa POPTR_0001s35830 N 0.761
B9I3I8_POPTR Populus trichocarpa POPTR_0012s09200 N 0.732
B9IF14_POPTR Populus trichocarpa POPTR_0015s09810 N 0.725
ppa008913m Prunus persica ppa008913m N 0.761
ppa009286m Prunus persica ppa009286m N 0.746
SB02G011330 Sorghum bicolor Sb02g011330 N 0.838
SB07G024400 Sorghum bicolor Sb07g024400 N 0.944
XM_002865734.1 Arabidopsis lyrata scaffold_801433.1 N 0.711