Cucsa.196330 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.196330 T49586_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.196330.1 RRM 154 224
Cucsa.196330.1 RRM 248 318

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30147.m013835 Ricinus communis 30147.m013835 N 0.859
GSVIVG00032361001 Vitis vinifera GSVIVG00032361001 N 0.852
cassava511.valid.m1 Manihot esculenta cassava511.valid.m1 N 0.852
Glyma06g18470.1 Glycine max Glyma06g18470.1 N 0.845
cassava30233.valid.m1 Manihot esculenta cassava30233.valid.m1 N 0.838
XM_002867599.1 Arabidopsis lyrata fgenesh2_kg.7__1798__AT4G24770.1 N 0.831
B9I3I8_POPTR Populus trichocarpa POPTR_0012s09200 N 0.817
PK05280.1 Cannabis sativa PK05280.1 N 0.817
ppa009286m Prunus persica ppa009286m N 0.817
Glyma17g13470.1 Glycine max Glyma17g13470.1 N 0.817
cassava512.valid.m1 Manihot esculenta cassava512.valid.m1 N 0.810
XM_002865734.1 Arabidopsis lyrata scaffold_801433.1 N 0.810
LOC_Os09g39180 Oryza sativa LOC_Os09g39180 N 0.810
ATRBP31 Arabidopsis thaliana AT4G24770-TAIR-G N 0.810
ppa008913m Prunus persica ppa008913m N 0.803
MDP0000218595 Malus x domestica MDP0000218595 N 0.803
mgf008267m Mimulus guttatus mgf008267m N 0.796
Glyma04g36420.1 Glycine max Glyma04g36420.1 N 0.796
GSVIVG00007596001 Vitis vinifera GSVIVG00007596001 N 0.796
MDP0000919119 Malus x domestica MDP0000919119 N 0.796
PK28733.1 Cannabis sativa PK28733.1 N 0.789
Glyma05g02800.1 Glycine max Glyma05g02800.1 N 0.789
GRMZM2G011129 Zea mays GRMZM2G011129 N 0.789
BRADI4G38260 Brachypodium distachyon BRADI4G38260 N 0.789
mgf001484m Mimulus guttatus mgf001484m N 0.782
SB02G011330 Sorghum bicolor Sb02g011330 N 0.782
CP31B Arabidopsis thaliana AT5G50250-TAIR-G N 0.782
A9PG08_POPTR Populus trichocarpa POPTR_0001s35830 N 0.775
B9IF14_POPTR Populus trichocarpa POPTR_0015s09810 N 0.768
MDP0000528470 Malus x domestica MDP0000528470 N 0.761
mgf009747m Mimulus guttatus mgf009747m N 0.732
MDP0000299693 Malus x domestica MDP0000299693 N 0.732
MDP0000296631 Malus x domestica MDP0000296631 N 0.732
SB07G024400 Sorghum bicolor Sb07g024400 N 0.732
LOC_Os08g44290 Oryza sativa LOC_Os08g44290 N 0.718
BGIOSIBCE028840 Oryza indica BGIOSIBCE028840 N 0.718
GRMZM2G123234 Zea mays GRMZM2G123234 N 0.718