XM_002865734.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 scaffold_801433.1 T46146_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_801433.1 RRM 115 185
scaffold_801433.1 RRM 209 279

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CP31B Arabidopsis thaliana AT5G50250-TAIR-G N 0.915
XM_002867599.1 Arabidopsis lyrata fgenesh2_kg.7__1798__AT4G24770.1 N 0.901
Glyma06g18470.1 Glycine max Glyma06g18470.1 N 0.845
ATRBP31 Arabidopsis thaliana AT4G24770-TAIR-G N 0.845
cassava30233.valid.m1 Manihot esculenta cassava30233.valid.m1 N 0.845
cassava511.valid.m1 Manihot esculenta cassava511.valid.m1 N 0.838
30147.m013835 Ricinus communis 30147.m013835 N 0.831
ppa009286m Prunus persica ppa009286m N 0.824
Glyma04g36420.1 Glycine max Glyma04g36420.1 N 0.817
mgf008267m Mimulus guttatus mgf008267m N 0.817
GSVIVG00032361001 Vitis vinifera GSVIVG00032361001 N 0.810
PK05280.1 Cannabis sativa PK05280.1 N 0.810
Cucsa.196330 Cucumis sativus Cucsa.196330 N 0.810
B9I3I8_POPTR Populus trichocarpa POPTR_0012s09200 N 0.803
cassava512.valid.m1 Manihot esculenta cassava512.valid.m1 N 0.796
BRADI4G38260 Brachypodium distachyon BRADI4G38260 N 0.796
GRMZM2G011129 Zea mays GRMZM2G011129 N 0.789
ppa008913m Prunus persica ppa008913m N 0.789
LOC_Os09g39180 Oryza sativa LOC_Os09g39180 N 0.789
A9PG08_POPTR Populus trichocarpa POPTR_0001s35830 N 0.789
PK28733.1 Cannabis sativa PK28733.1 N 0.782
GSVIVG00007596001 Vitis vinifera GSVIVG00007596001 N 0.782
Glyma17g13470.1 Glycine max Glyma17g13470.1 N 0.782
MDP0000218595 Malus x domestica MDP0000218595 N 0.782
B9IF14_POPTR Populus trichocarpa POPTR_0015s09810 N 0.782
SB02G011330 Sorghum bicolor Sb02g011330 N 0.782
MDP0000919119 Malus x domestica MDP0000919119 N 0.775
Glyma05g02800.1 Glycine max Glyma05g02800.1 N 0.775
MDP0000528470 Malus x domestica MDP0000528470 N 0.768
mgf001484m Mimulus guttatus mgf001484m N 0.761
MDP0000296631 Malus x domestica MDP0000296631 N 0.754
MDP0000299693 Malus x domestica MDP0000299693 N 0.754
mgf009747m Mimulus guttatus mgf009747m N 0.725
GRMZM2G123234 Zea mays GRMZM2G123234 N 0.718
MDP0000224531 Malus x domestica MDP0000224531 N 0.718
BGIOSIBCE028840 Oryza indica BGIOSIBCE028840 N 0.711
LOC_Os08g44290 Oryza sativa LOC_Os08g44290 N 0.711
SB07G024400 Sorghum bicolor Sb07g024400 N 0.704