cassava511.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava511.valid.m1 T49430_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava511.valid.m1 RRM 157 227
cassava511.valid.m1 RRM 251 321

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava512.valid.m1 Manihot esculenta cassava512.valid.m1 N 0.951
cassava30233.valid.m1 Manihot esculenta cassava30233.valid.m1 N 0.944
30147.m013835 Ricinus communis 30147.m013835 N 0.915
B9I3I8_POPTR Populus trichocarpa POPTR_0012s09200 N 0.873
GSVIVG00032361001 Vitis vinifera GSVIVG00032361001 N 0.866
XM_002867599.1 Arabidopsis lyrata fgenesh2_kg.7__1798__AT4G24770.1 N 0.866
PK05280.1 Cannabis sativa PK05280.1 N 0.852
Glyma06g18470.1 Glycine max Glyma06g18470.1 N 0.852
Cucsa.196330 Cucumis sativus Cucsa.196330 N 0.852
A9PG08_POPTR Populus trichocarpa POPTR_0001s35830 N 0.845
GSVIVG00007596001 Vitis vinifera GSVIVG00007596001 N 0.838
XM_002865734.1 Arabidopsis lyrata scaffold_801433.1 N 0.838
MDP0000919119 Malus x domestica MDP0000919119 N 0.831
MDP0000218595 Malus x domestica MDP0000218595 N 0.831
ppa008913m Prunus persica ppa008913m N 0.824
ATRBP31 Arabidopsis thaliana AT4G24770-TAIR-G N 0.824
ppa009286m Prunus persica ppa009286m N 0.817
Glyma17g13470.1 Glycine max Glyma17g13470.1 N 0.817
mgf008267m Mimulus guttatus mgf008267m N 0.810
SB02G011330 Sorghum bicolor Sb02g011330 N 0.810
LOC_Os09g39180 Oryza sativa LOC_Os09g39180 N 0.810
Glyma04g36420.1 Glycine max Glyma04g36420.1 N 0.810
GRMZM2G011129 Zea mays GRMZM2G011129 N 0.810
mgf001484m Mimulus guttatus mgf001484m N 0.803
BRADI4G38260 Brachypodium distachyon BRADI4G38260 N 0.803
CP31B Arabidopsis thaliana AT5G50250-TAIR-G N 0.803
Glyma05g02800.1 Glycine max Glyma05g02800.1 N 0.803
MDP0000528470 Malus x domestica MDP0000528470 N 0.803
B9IF14_POPTR Populus trichocarpa POPTR_0015s09810 N 0.796
PK28733.1 Cannabis sativa PK28733.1 N 0.775
MDP0000299693 Malus x domestica MDP0000299693 N 0.746
MDP0000296631 Malus x domestica MDP0000296631 N 0.746
mgf009747m Mimulus guttatus mgf009747m N 0.739
BGIOSIBCE028840 Oryza indica BGIOSIBCE028840 N 0.739
LOC_Os08g44290 Oryza sativa LOC_Os08g44290 N 0.739
SB07G024400 Sorghum bicolor Sb07g024400 N 0.732
GRMZM2G123234 Zea mays GRMZM2G123234 N 0.725
chr4.CM0173.30.nd Lotus japonicus chr4.CM0173.30.nd N 0.704
BRADI3G42700 Brachypodium distachyon BRADI3G42700 N 0.704
MDP0000224531 Malus x domestica MDP0000224531 N 0.704