syncrip (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000040184 T36139_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.930
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.875
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.851
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000058778 RRM 164 232
ENSDARP00000058778 RRM 245 312
ENSDARP00000058778 RRM 340 402

Links

Other RRM family RBPs
Other Danio rerio RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH70529 Xenopus laevis AAH70529 I 0.925
AAI61702 Xenopus laevis AAI61702 I 0.861
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.847
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.920
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.925
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.851
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.920
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.847
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.920
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.839
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.834
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.847
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.751
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.920
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.847
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.920
syncripl Danio rerio ENSDARG00000026723 I 0.886
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.735
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.760
LOC100070472 Equus caballus ENSECAG00000012464 I 0.770
HNRNPR Equus caballus ENSECAG00000013733 I 0.847
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.809
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.920
HNRNPR Homo sapiens ENSG00000125944 I 0.847
SYNCRIP Homo sapiens ENSG00000135316 I 0.920
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.825
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.901
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.915
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.842
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.925
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.920
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.847
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.847
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.920
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.721
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.842
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.925
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.920
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.910
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.794
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.847
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.920
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.920
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.842
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.920
Syncrip Mus musculus ENSMUSG00000032423 I 0.915
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.847
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.847
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.920
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.920
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.839
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.760
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.824
SYNCRIP Ochotona princeps ENSOPRG00000010624 I 0.700
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.746
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.803
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.905
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.886
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.721
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.847
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.920
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.834
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.920
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.920
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.834
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.915
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.847
ENSRNOG00000033356 Rattus norvegicus ENSRNOG00000033356 I 0.707
HNRNPR Sorex araneus ENSSARG00000001732 I 0.834
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.920
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.920
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.834
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.842
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.911
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.896
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.810
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.896
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.806
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.911
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.920
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.776
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.920
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.866
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.930