pabpn1 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000045373 T36161_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.943
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000066721 RRM 100 169
ENSDARP00000100125 RRM 100 169

Links

Other RRM family RBPs
Other Danio rerio RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
143355 Helobdella robusta 143355 N 0.000
143653 Helobdella robusta 143653 N 0.000
A1L3F4 Xenopus laevis A1L3F4 I 0.000
AAI28670 Xenopus laevis AAI28670 I 0.000
AAI30070 Xenopus laevis AAI30070 I 0.000
AAI30114 Xenopus laevis AAI30114 I 0.000
AAI33220 Xenopus laevis AAI33220 I 0.000
AAI42552 Xenopus laevis AAI42552 I 0.000
amel4_ncbi_hmm6985 Apis mellifera amel4_ncbi_hmm6985 I 0.000
Ame_R004658 Ailuropoda melanoleuca Ame_R004658 I 0.000
Ame_R007174 Ailuropoda melanoleuca Ame_R007174 I 0.000
Ame_R011921 Ailuropoda melanoleuca Ame_R011921 I 0.000
BAH79688 Xenopus laevis BAH79688 I 0.000
BGIBMGA012436 Bombyx mori BGIBMGA012436 I 0.000
MEX3A Anolis carolinensis ENSACAG00000003739 N 0.000
MEX3C Anolis carolinensis ENSACAG00000010265 I 0.000
MEX3B Anolis carolinensis ENSACAG00000011072 I 0.000
Q2YDI4_BOVIN Bos taurus ENSBTAG00000014886 I 0.000
MEX3B Bos taurus ENSBTAG00000016630 I 0.000
MEX3D Bos taurus ENSBTAG00000044028 I 0.000
MEX3C Canis familiaris ENSCAFG00000000162 I 0.000
MEX3B Canis familiaris ENSCAFG00000013759 I 0.000
MEX3D Canis familiaris ENSCAFG00000023712 I 0.000
MEX3C Choloepus hoffmanni ENSCHOG00000004915 I 0.000
ENSCING00000002603 Ciona intestinalis ENSCING00000002603 I 0.000
MKNK2 Callithrix jacchus ENSCJAG00000000539 I 0.000
LOC100410023 Callithrix jacchus ENSCJAG00000001902 I 0.000
MEX3B Callithrix jacchus ENSCJAG00000008043 I 0.000
ENSCPOG00000008241 Cavia porcellus ENSCPOG00000008241 I 0.000
MEX3C Cavia porcellus ENSCPOG00000009646 I 0.000
MEX3B Cavia porcellus ENSCPOG00000023663 I 0.000
MEX3B Danio rerio ENSDARG00000058369 I 0.000
MEX3C Dasypus novemcinctus ENSDNOG00000006544 I 0.000
MEX3B Dasypus novemcinctus ENSDNOG00000012736 I 0.000
Mex3c Dipodomys ordii ENSDORG00000007962 I 0.000
LOC100063974 Equus caballus ENSECAG00000007279 N 0.000
MEX3B Equus caballus ENSECAG00000013497 I 0.000
MEX3C Equus caballus ENSECAG00000021727 I 0.000
MEX3C Erinaceus europaeus ENSEEUG00000010864 I 0.000
MEX3C Echinops telfairi ENSETEG00000003647 I 0.000
MEX3D Felis catus ENSFCAG00000002615 I 0.000
MEX3C Homo sapiens ENSG00000176624 I 0.000
MEX3D Homo sapiens ENSG00000181588 I 0.000
MEX3B Homo sapiens ENSG00000183496 I 0.000
MEX3C Gasterosteus aculeatus ENSGACG00000007490 I 0.000
MEX3B Gasterosteus aculeatus ENSGACG00000012530 I 0.000
MEX3A Gasterosteus aculeatus ENSGACG00000013282 N 0.000
MEX3D Gasterosteus aculeatus ENSGACG00000015299 I 0.000
MEX3D Gallus gallus ENSGALG00000001106 I 0.000
MEX3A Gallus gallus ENSGALG00000014016 N 0.000
MEX3B Gorilla gorilla ENSGGOG00000000597 I 0.000
MEX3D Gorilla gorilla ENSGGOG00000001083 I 0.000
MEX3C Gorilla gorilla ENSGGOG00000014875 I 0.000
MEX3B Loxodonta africana ENSLAFG00000006027 I 0.000
MEX3A Loxodonta africana ENSLAFG00000009220 N 0.000
MEX3C Loxodonta africana ENSLAFG00000027818 I 0.000
MEX3B Macropus eugenii ENSMEUG00000002402 I 0.000
MEX3C Macropus eugenii ENSMEUG00000015929 I 0.000
MEX3D Macropus eugenii ENSMEUG00000016404 I 0.000
MEX3D Meleagris gallopavo ENSMGAG00000002325 I 0.000
MEX3A Meleagris gallopavo ENSMGAG00000015563 N 0.000
MEX3C Microcebus murinus ENSMICG00000005815 I 0.000
MEX3A Myotis lucifugus ENSMLUG00000010185 N 0.000
MEX3C Myotis lucifugus ENSMLUG00000012585 I 0.000
MEX3D Myotis lucifugus ENSMLUG00000017018 N 0.000
MEX3B Macaca mulatta ENSMMUG00000018639 I 0.000
MEX3C Macaca mulatta ENSMMUG00000023652 I 0.000
MEX3D Monodelphis domestica ENSMODG00000004116 I 0.000
MEX3C Monodelphis domestica ENSMODG00000011001 I 0.000
MEX3B Monodelphis domestica ENSMODG00000019387 I 0.000
Mex3c Mus musculus ENSMUSG00000037253 I 0.000
Mex3d Mus musculus ENSMUSG00000048696 I 0.000
Mex3b Mus musculus ENSMUSG00000057706 I 0.000
MEX3C Ornithorhynchus anatinus ENSOANG00000008116 I 0.000
MEX3D Ornithorhynchus anatinus ENSOANG00000011764 I 0.000
MEX3B Oryctolagus cuniculus ENSOCUG00000011603 I 0.000
ENSOCUG00000012549 Oryctolagus cuniculus ENSOCUG00000012549 I 0.000
MEX3B Otolemur garnettii ENSOGAG00000016362 I 0.000
MEX3D Ochotona princeps ENSOPRG00000008708 I 0.000
MEX3B Ochotona princeps ENSOPRG00000009604 I 0.000
MEX3C Oryzias latipes ENSORLG00000004985 I 0.000
MEX3C Procavia capensis ENSPCAG00000009258 I 0.000
MEX3D Procavia capensis ENSPCAG00000010972 I 0.000
MEX3B Procavia capensis ENSPCAG00000014150 I 0.000
ENSPPYG00000006723 Pongo pygmaeus ENSPPYG00000006723 I 0.000
ENSPPYG00000009324 Pongo pygmaeus ENSPPYG00000009324 I 0.000
MEX3B Pan troglodytes ENSPTRG00000007373 I 0.000
MEX3C Pan troglodytes ENSPTRG00000010029 I 0.000
MEX3D Pan troglodytes ENSPTRG00000010208 I 0.000
MEX3A Pan troglodytes ENSPTRG00000030373 N 0.000
MEX3B Pteropus vampyrus ENSPVAG00000000093 I 0.000
MEX3A Pteropus vampyrus ENSPVAG00000010333 I 0.000
MEX3C Pteropus vampyrus ENSPVAG00000015135 I 0.000
Mex3c Rattus norvegicus ENSRNOG00000015777 I 0.000
D3ZFL6_RAT Rattus norvegicus ENSRNOG00000025142 I 0.000
Mex3d Rattus norvegicus ENSRNOG00000030830 I 0.000
MEX3B Sorex araneus ENSSARG00000006007 I 0.000
MEX3C Sorex araneus ENSSARG00000006940 I 0.000
MEX3A Sorex araneus ENSSARG00000009868 N 0.000
MEX3C Tupaia belangeri ENSTBEG00000014438 I 0.000
MEX3D Taeniopygia guttata ENSTGUG00000000201 I 0.000
MEX3A Taeniopygia guttata ENSTGUG00000003692 N 0.000
MEX3B Tetraodon nigroviridis ENSTNIG00000003398 I 0.000
MEX3A Tetraodon nigroviridis ENSTNIG00000004473 N 0.000
MEX3D Tetraodon nigroviridis ENSTNIG00000015325 I 0.000
MEX3B Takifugu rubripes ENSTRUG00000000367 I 0.000
MEX3A Takifugu rubripes ENSTRUG00000007796 N 0.000
MEX3D Takifugu rubripes ENSTRUG00000007986 I 0.000
MEX3C Takifugu rubripes ENSTRUG00000011888 I 0.000
MEX3C Tursiops truncatus ENSTTRG00000004570 I 0.000
MEX3D Tursiops truncatus ENSTTRG00000008132 I 0.000
MEX3C Vicugna pacos ENSVPAG00000003137 I 0.000
mex3a Xenopus tropicalis ENSXETG00000012704 N 0.000
mex3c Xenopus tropicalis ENSXETG00000022367 I 0.000
estExt_fgenesh2_pg.C_2010087 Branchiostoma floridae estExt_fgenesh2_pg.C_2010087 I 0.000
estExt_Genewise1.C_sca_540218 Lottia gigantea estExt_Genewise1.C_sca_540218 I 0.000
e_gw1.15.409.1 Daphnia pulex e_gw1.15.409.1 I 0.000
e_gw1.3.1475.1 Trichoplax adhaerens e_gw1.3.1475.1 I 0.000
e_gw1.312.50.1 Capitella teleta e_gw1.312.50.1 I 0.000
CG11360 Drosophila melanogaster FBgn0039920 D 0.000
GA10947-RA Drosophila pseudoobscura FBgn0071003 I 0.000
GG16398 Drosophila erecta FBgn0108630 I 0.000
GH23938 Drosophila grimshawi FBgn0131395 I 0.000
GL18139 Drosophila persimilis FBgn0155742 I 0.000
GD24410 Drosophila simulans FBgn0195748 I 0.000
GJ18673 Drosophila virilis FBgn0205827 I 0.000
GK13594 Drosophila willistoni FBgn0215602 I 0.000
GE14558 Drosophila yakuba FBgn0232157 I 0.000
gw.320.9.1 Nematostella vectensis gw.320.9.1 I 0.000
nasonia_NCBI_hmm456104 Nasonia vitripennis nasonia_NCBI_hmm456104 I 0.000
PHUM418100 Pediculus humanus PHUM418100 I 0.000
Ppa-mex-3 Pristionchus pacificus PPA08528 N 0.000
XP_001175528.1 Strongylocentrotus purpuratus XP_001175528.1 I 0.000
XP_002168292.1 Hydra magnipapillata XP_002168292.1 I 0.000
XP_786425.2 Strongylocentrotus purpuratus XP_786425.2 I 0.000