CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Rbm45
(
Dipodomys ordii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDORG00000015831
T36540_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000014891
RRM
31
96
VISKYTPESVIRESFAPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACKAMEEMHGQCLGPNDT
ENSDORP00000014891
RRM
113
186
RDVEDEELTRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFR
ENSDORP00000014891
RRM
397
456
NPHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYAKYADRLSANDAIATLHGKILNGVRLK
Links
Other
RRM
family RBPs
Other
Dipodomys ordii
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
28629.m000549
Ricinus communis
28629.m000549
N
0.000
cassava19191.valid.m1
Manihot esculenta
cassava19191.valid.m1
N
0.000
cassava19192.valid.m1
Manihot esculenta
cassava19192.valid.m1
N
0.000
cassava21692.m1
Manihot esculenta
cassava21692.m1
N
0.000
cassava21693.m1
Manihot esculenta
cassava21693.m1
N
0.000
cassava29630.valid.m1
Manihot esculenta
cassava29630.valid.m1
N
0.000
chr1.CM0010.50.nc
Lotus japonicus
chr1.CM0010.50.nc
N
0.000
Cucsa.185730
Cucumis sativus
Cucsa.185730
N
0.000
Glyma03g35450.1
Glycine max
Glyma03g35450.1
N
0.000
GSVIVG00036119001
Vitis vinifera
GSVIVG00036119001
N
0.000
MDP0000181657
Malus x domestica
MDP0000181657
N
0.000
MDP0000851531
Malus x domestica
MDP0000851531
N
0.000
Medtr7g127590
Medicago truncatula
Medtr7g127590
N
0.000
mgf001576m
Mimulus guttatus
mgf001576m
N
0.000
PDK_20s1316982g002
Phoenix dactylifera
PDK_20s1316982g002
N
0.000
PK04414.1
Cannabis sativa
PK04414.1
N
0.000
PK05405.1
Cannabis sativa
PK05405.1
N
0.000
B9HC85_POPTR
Populus trichocarpa
POPTR_0006s22890
N
0.000
B9IIU5_POPTR
Populus trichocarpa
POPTR_0016s08010
N
0.000
ppa004677m
Prunus persica
ppa004677m
N
0.000
ppa004785m
Prunus persica
ppa004785m
N
0.000