HNRNPA2B1 (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000122566 T37238_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA2B1
M024_0.6		 Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.814
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.814
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.814
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.793
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M024_0.6 RRM 23 92
M024_0.6 RRM 114 183

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000346694 RRM 23 92
ENSP00000346694 RRM 114 183
ENSP00000349101 RRM 11 80
ENSP00000349101 RRM 102 171
ENSP00000354021 RRM 23 92
ENSP00000354021 RRM 114 183
ENSP00000386735 RRM 23 92
ENSP00000386735 RRM 114 183

Links

Other RRM family RBPs
Other Homo sapiens RBPs

225 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AMAG_03225 Allomyces macrogynus AMAG_03225 N 0.000
BDBG_06195 Blastomyces dermatitidis BDBG_06195 N 0.000
ACLA_045660 Aspergillus clavatus CADACLAG00004652 N 0.000
AFUA_4G06350 Aspergillus fumigatus CADAFUAG00008260 N 0.000
An04g00680 Aspergillus niger CADANGAG00003776 N 0.000
ANIA_04346 Aspergillus nidulans CADANIAG00006114 N 0.000
ATEG_05588 Aspergillus terreus CADATEAG00005000 N 0.000
NFIA_109800 Neosartorya fischeri CADNFIAG00009499 N 0.000
CIMG_04180 Coccidioides immitis CIMG_04180 N 0.000
CPSG_03082 Coccidioides posadasii CPSG_03082 N 0.000
estExt_fgenesh1_pg.C_90140 Trichoderma atroviride estExt_fgenesh1_pg.C_90140 N 0.000
estExt_Genewise1.C_170171 Neurospora tetrasperma estExt_Genewise1.C_170171 N 0.000
estExt_Genewise1Plus.C_100354 Neurospora discreta estExt_Genewise1Plus.C_100354 N 0.000
estExt_Genewise1Plus.C_200094 Postia placenta estExt_Genewise1Plus.C_200094 N 0.000
estExt_Genewise1Plus.C_61440 Thielavia terrestris estExt_Genewise1Plus.C_61440 N 0.000
e_gw1.1.997.1 Trichoderma reesei e_gw1.1.997.1 N 0.000
e_gw1.10.335.1 Mucor circinelloides e_gw1.10.335.1 N 0.000
e_gw1.11.592.1 Nectria haematococca e_gw1.11.592.1 N 0.000
e_gw1.17.425.1 Trichoderma virens e_gw1.17.425.1 N 0.000
e_gw1.87.91.1 Postia placenta e_gw1.87.91.1 N 0.000
fgenesh1_pg.C_scaffold_1000567 Sporobolomyces roseus fgenesh1_pg.C_scaffold_1000567 N 0.000
fgenesh1_pg.C_scaffold_2000511 Cryphonectria parasitica fgenesh1_pg.C_scaffold_2000511 N 0.000
fgenesh1_pm.00609_#_590 Aspergillus carbonarius fgenesh1_pm.00609_#_590 N 0.000
FOXG_13842 Fusarium oxysporum FOXG_13842 N 0.000
FVEG_11271 Fusarium verticillioides FVEG_11271 N 0.000
GLRG_08650 Colletotrichum graminicola GLRG_08650 N 0.000
GSTUMT00006382001 Tuber melanosporum GSTUMT00006382001 N 0.000
MCYG_01275 Microsporum canis MCYG_01275 N 0.000
MGG_12370 Magnaporthe oryzae MGG_12370 N 0.000
NCU08518 Neurospora crassa NCU08518 N 0.000
PABG_04180 Paracoccidioides brasiliensis PABG_04180 N 0.000
Pa_3_7140 Podospora anserina Pa_3_7140 N 0.000
RO3G_08088 Rhizopus oryzae RO3G_08088 N 0.000
SS1G_03893 Sclerotinia sclerotiorum SS1G_03893 N 0.000