ELAVL4 (Pteropus vampyrus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPVAG00000003632 T40854_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.882
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.882
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.882
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.858
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.858
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.858
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.725
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.725
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.725
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.725
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.725
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000003432 RRM 53 123
ENSPVAP00000003432 RRM 139 207
ENSPVAP00000003432 RRM 318 373

Links

Other RRM family RBPs
Other Pteropus vampyrus RBPs

163 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA96942 Xenopus laevis AAA96942 I 0.717
AAA96943 Xenopus laevis AAA96943 I 0.873
AAA96944 Xenopus laevis AAA96944 I 0.849
AAA96945 Xenopus laevis AAA96945 I 0.892
AAH86269 Xenopus laevis AAH86269 I 0.717
AAH94189 Xenopus laevis AAH94189 I 0.873
AAH99348 Xenopus laevis AAH99348 I 0.892
AAI16460 Xenopus laevis AAI16460 I 0.000
AAI69769 Xenopus laevis AAI69769 I 0.849
AAI70539 Xenopus laevis AAI70539 I 0.873
AGAP000965 Anopheles gambiae AGAP000965 I 0.000
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.722
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.869
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.848
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.897
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.726
CAA59430 Xenopus laevis CAA59430 I 0.869
CBF67567 Xenopus laevis CBF67567 I 0.892
CBU92440 Xenopus laevis CBU92440 I 0.892
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.000
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.000
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.000
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.000
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.897
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.844
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.873
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.722
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.848
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.897
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.869
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.897
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.848
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.726
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.736
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.897
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.869
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.897
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.897
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.869
ENSCPOG00000022816 Cavia porcellus ENSCPOG00000022816 I 0.749
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.000
elavl3 Danio rerio ENSDARG00000014420 I 0.848
hug Danio rerio ENSDARG00000016405 I 0.744
elavl1 Danio rerio ENSDARG00000038695 I 0.725
elavl2 Danio rerio ENSDARG00000040732 I 0.845
elavl4 Danio rerio ENSDARG00000045639 I 0.884
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.717
ELAVL2 Dasypus novemcinctus ENSDNOG00000016605 I 0.703
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.839
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.726
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.869
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.897
LOC100060819 Equus caballus ENSECAG00000019459 I 0.722
ELAVL2 Equus caballus ENSECAG00000020142 I 0.869
LOC100056901 Equus caballus ENSECAG00000020594 I 0.768
LOC100051268 Equus caballus ENSECAG00000022284 I 0.897
ELAVL2 Erinaceus europaeus ENSEEUG00000008733 I 0.703
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.897
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.869
ELAVL4 Echinops telfairi ENSETEG00000013779 I 0.755
ELAVL1 Felis catus ENSFCAG00000014947 I 0.726
ELAVL1 Homo sapiens ENSG00000066044 D 0.726
ELAVL2 Homo sapiens ENSG00000107105 D 0.869
ELAVL4 Homo sapiens ENSG00000162374 D 0.897
ELAVL3 Homo sapiens ENSG00000196361 I 0.848
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.715
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.883
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.000
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.848
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.850
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.722
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.897
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.845
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.897
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.869
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.726
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.848
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.897
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.726
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.848
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.869
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.720
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.897
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.849
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.722
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.897
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.724
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.897
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.726
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.897
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.731
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.864
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.726
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.869
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.897
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.897
ENSMODG00000003850 Monodelphis domestica ENSMODG00000003850 I 0.000
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.873
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.726
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.820
Elavl3 Mus musculus ENSMUSG00000003410 I 0.839
Elavl2 Mus musculus ENSMUSG00000008489 I 0.869
Elavl4 Mus musculus ENSMUSG00000028546 I 0.897
Elavl1 Mus musculus ENSMUSG00000040028 I 0.726
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.782
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.869
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.736
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.897
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.848
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.726
ELAVL2 Otolemur garnettii ENSOGAG00000016228 I 0.731
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.897
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.736
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.869
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.897
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.000
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.858
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.840
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.722
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.887
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.897
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.820
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.897
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.726
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.869
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.897
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.726
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.829
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.869
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.869
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.848
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.726
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.869
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.839
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.897
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.869
ELAVL3 Sorex araneus ENSSARG00000005949 I 0.000
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.897
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.869
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.731
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.848
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.744
ELAVL2 Spermophilus tridecemlineatus ENSSTOG00000007792 I 0.000
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.712
ELAVL3 Tupaia belangeri ENSTBEG00000006133 I 0.711
ELAVL4 Tupaia belangeri ENSTBEG00000011730 I 0.755
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.000
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.722
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.840
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.897
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.850
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.883
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.836
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.722
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.883
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.716
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.000
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.854
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.848
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.897
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.726
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.899
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.848
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.864
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.869
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.897
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.892
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.722
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.722
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.845
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.000
Rbp9 Drosophila melanogaster FBgn0010263 D 0.000
GF14992 Drosophila ananassae FBgn0092017 I 0.000
GG24901 Drosophila erecta FBgn0117030 I 0.000
GH13638 Drosophila grimshawi FBgn0121114 I 0.000
GI11879 Drosophila mojavensis FBgn0134637 I 0.000
GL26299 Drosophila persimilis FBgn0163881 I 0.000
GM18380 Drosophila sechellia FBgn0173287 I 0.000
GJ13991 Drosophila virilis FBgn0201209 I 0.000
GK14865 Drosophila willistoni FBgn0216870 I 0.000
GE18193 Drosophila yakuba FBgn0235624 I 0.000
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.000
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.000
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.703
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.718
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.726
Q1JQ73 Xenopus laevis Q1JQ73 I 0.000
Q5U259 Xenopus laevis Q5U259 I 0.717
Q91584 Xenopus laevis Q91584 I 0.849
Q91903 Xenopus laevis Q91903 I 0.873