bru-3 (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0262350 T44427_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6		 Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M117_0.6 RRM 51 119
M117_0.6 RRM 333 403

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0075557 RRM 57 125
FBpp0075557 RRM 339 409
FBpp0075558 RRM 24 66
FBpp0075558 RRM 280 350
FBpp0292548 RRM 57 125
FBpp0292548 RRM 313 383
FBpp0292549 RRM 43 111
FBpp0292549 RRM 299 369
FBpp0292550 RRM 43 111
FBpp0292550 RRM 325 395
FBpp0292551 RRM 23 66
FBpp0292551 RRM 254 324
FBpp0292552 RRM 43 111
FBpp0292552 RRM 307 377
FBpp0292553 RRM 43 111
FBpp0292553 RRM 333 403
FBpp0292554 RRM 37 105
FBpp0292554 RRM 301 371
FBpp0292556 RRM 23 66
FBpp0292556 RRM 248 318
FBpp0292557 RRM 24 66
FBpp0292557 RRM 262 332
FBpp0292558 RRM 24 66
FBpp0292558 RRM 287 357

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62054 Helobdella robusta 62054 I 0.764
90208 Helobdella robusta 90208 I 0.801
AAEL000695 Aedes aegypti AAEL000695 I 0.700
AAEL014033 Aedes aegypti AAEL014033 I 0.921
AGAP004950 Anopheles gambiae AGAP004950 I 0.921
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.893
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.707
CJA07020 Caenorhabditis japonica CJA07020 I 0.757
CPIJ016329 Culex quinquefasciatus CPIJ016329 I 0.714
CpipJ_CPIJ016329 Culex pipiens CpipJ_CPIJ016329 I 0.714
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.836
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.729
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.843
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.821
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.729
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.843
ENSFCAG00000007908 Felis catus ENSFCAG00000007908 N 0.707
BRUNOL6 Homo sapiens ENSG00000140488 D 0.821
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.857
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.871
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.879
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.886
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.837
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.729
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.800
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.879
CELF5 Microcebus murinus ENSMICG00000003506 N 0.774
HEXA Macaca mulatta ENSMMUG00000010687 I 0.821
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.700
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.728
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.871
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.843
Celf6 Mus musculus ENSMUSG00000032297 I 0.829
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.893
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.729
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.814
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.829
CELF6 Oryzias latipes ENSORLG00000013392 I 0.871
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.821
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.871
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.736
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.886
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.864
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.807
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.871
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.864
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.764
estExt_fgenesh2_pm.C_730008 Branchiostoma floridae estExt_fgenesh2_pm.C_730008 I 0.721
GF10965 Drosophila ananassae FBgn0088005 I 1.000
GG13757 Drosophila erecta FBgn0106020 I 1.000
GH14684 Drosophila grimshawi FBgn0122160 I 0.993
GI13095 Drosophila mojavensis FBgn0135852 I 0.993
GL21647 Drosophila persimilis FBgn0159240 I 0.950
GM24582 Drosophila sechellia FBgn0179445 I 1.000
GD12651 Drosophila simulans FBgn0184378 I 1.000
GJ13842 Drosophila virilis FBgn0201061 I 0.993
GK17101 Drosophila willistoni FBgn0219100 I 0.993
GE20053 Drosophila yakuba FBgn0237378 I 1.000
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.971
FBgn0262475 Drosophila melanogaster FBgn0262475 I 0.707
LOAG_05508 Loa loa LOAG_05508 I 0.807
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.893
PHUM315130 Pediculus humanus PHUM315130 I 0.929
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.743
Smp_041280 Schistosoma mansoni Smp_041280 I 0.836
Smp_131780 Schistosoma mansoni Smp_131780 I 0.757