CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
PHUM315130
(
Pediculus humanus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PHUM315130
T45347_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.929
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM315130-PA
RRM
39
107
LFVGMLSKQQSEEDVRQLFGPFGAIEECTILRGPEGASKGCAFVKFSSHQEAQAAINNLHGSQTMPGAS
PHUM315130-PA
RRM
299
369
LFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Pediculus humanus
RBPs
64 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
62054
Helobdella robusta
62054
I
0.779
90208
Helobdella robusta
90208
I
0.794
AAEL000695
Aedes aegypti
AAEL000695
I
0.707
AAEL014033
Aedes aegypti
AAEL014033
I
0.921
AGAP004950
Anopheles gambiae
AGAP004950
I
0.921
amel4_ncbi_hmm7761
Apis mellifera
amel4_ncbi_hmm7761
I
0.900
BGIBMGA010431
Bombyx mori
BGIBMGA010431
I
0.729
CJA07020
Caenorhabditis japonica
CJA07020
I
0.743
CPIJ016329
Culex quinquefasciatus
CPIJ016329
I
0.721
CpipJ_CPIJ016329
Culex pipiens
CpipJ_CPIJ016329
I
0.721
CELF5
Anolis carolinensis
ENSACAG00000016959
I
0.879
Q2KI16_BOVIN
Bos taurus
ENSBTAG00000008937
I
0.729
CELF5
Callithrix jacchus
ENSCJAG00000014799
I
0.879
LOC100414308
Callithrix jacchus
ENSCJAG00000018355
I
0.821
LOC100391960
Callithrix jacchus
ENSCJAG00000020663
I
0.729
CELF5
Cavia porcellus
ENSCPOG00000005740
I
0.879
ENSFCAG00000007908
Felis catus
ENSFCAG00000007908
N
0.700
BRUNOL6
Homo sapiens
ENSG00000140488
D
0.821
CELF5
Gasterosteus aculeatus
ENSGACG00000012870
I
0.864
CELF6
Gasterosteus aculeatus
ENSGACG00000016626
I
0.893
A5A2G4_CHICK
Gallus gallus
ENSGALG00000001966
I
0.900
A5A2G2_CHICK
Gallus gallus
ENSGALG00000002413
I
0.914
CELF5
Gorilla gorilla
ENSGGOG00000002078
I
0.872
CELF2
Gorilla gorilla
ENSGGOG00000009330
I
0.729
ENSGGOG00000023049
Gorilla gorilla
ENSGGOG00000023049
I
0.807
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.907
HEXA
Macaca mulatta
ENSMMUG00000010687
I
0.821
CELF5
Macaca mulatta
ENSMMUG00000015513
I
0.714
CELF6
Monodelphis domestica
ENSMODG00000001784
I
0.886
CELF5
Monodelphis domestica
ENSMODG00000019151
I
0.879
Celf6
Mus musculus
ENSMUSG00000032297
I
0.829
CELF6
Ornithorhynchus anatinus
ENSOANG00000011308
I
0.907
CELF2
Ornithorhynchus anatinus
ENSOANG00000015432
I
0.729
CELF5
Ochotona princeps
ENSOPRG00000007881
I
0.843
CELF6
Ochotona princeps
ENSOPRG00000019169
I
0.829
CELF6
Oryzias latipes
ENSORLG00000013392
I
0.900
CELF6
Pan troglodytes
ENSPTRG00000034360
I
0.821
Brunol4
Rattus norvegicus
ENSRNOG00000014503
I
0.900
CELF3
Tupaia belangeri
ENSTBEG00000010130
I
0.729
BRUNOL4
Taeniopygia guttata
ENSTGUG00000001649
I
0.914
CELF5
Tetraodon nigroviridis
ENSTNIG00000010634
I
0.871
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.800
CELF6
Takifugu rubripes
ENSTRUG00000012391
I
0.900
CELF5
Takifugu rubripes
ENSTRUG00000017937
I
0.871
estExt_fgenesh2_pg.C_sca_1310025
Lottia gigantea
estExt_fgenesh2_pg.C_sca_1310025
I
0.786
estExt_fgenesh2_pm.C_730008
Branchiostoma floridae
estExt_fgenesh2_pm.C_730008
I
0.721
GF10965
Drosophila ananassae
FBgn0088005
I
0.929
GG13757
Drosophila erecta
FBgn0106020
I
0.929
GH14684
Drosophila grimshawi
FBgn0122160
I
0.921
GI13095
Drosophila mojavensis
FBgn0135852
I
0.921
GL21647
Drosophila persimilis
FBgn0159240
I
0.893
GM24582
Drosophila sechellia
FBgn0179445
I
0.929
GD12651
Drosophila simulans
FBgn0184378
I
0.929
GJ13842
Drosophila virilis
FBgn0201061
I
0.921
GK17101
Drosophila willistoni
FBgn0219100
I
0.929
GE20053
Drosophila yakuba
FBgn0237378
I
0.929
GA28624-RA
Drosophila pseudoobscura
FBgn0249984
I
0.914
bru-3
Drosophila melanogaster
FBgn0262350
D
0.929
FBgn0262475
Drosophila melanogaster
FBgn0262475
I
0.700
LOAG_05508
Loa loa
LOAG_05508
I
0.814
nasonia_NCBI_hmm496514
Nasonia vitripennis
nasonia_NCBI_hmm496514
I
0.886
Sjc_0024790
Schistosoma japonicum
Sjc_0024790
I
0.757
Smp_041280
Schistosoma mansoni
Smp_041280
I
0.836
Smp_131780
Schistosoma mansoni
Smp_131780
I
0.764