Medtr4g078540 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr4g078540 T54508_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr4g078540.1 RRM 39 108

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29005.m000257 Ricinus communis 29005.m000257 N 0.714
29585.m000588 Ricinus communis 29585.m000588 N 0.714
29876.m000260 Ricinus communis 29876.m000260 N 0.900
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.914
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.829
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.829
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.829
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.843
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.786
BRADI1G66430 Brachypodium distachyon BRADI1G66430 N 0.771
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.771
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.829
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.729
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.729
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.729
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.900
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.914
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.914
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.743
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.743
cassava6599.valid.m1 Manihot esculenta cassava6599.valid.m1 N 0.786
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.743
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.743
chr3.LjT39G24.170.nd Lotus japonicus chr3.LjT39G24.170.nd N 0.700
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.714
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.914
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.814
estExt_fgenesh1_pg.C_3900014 Physcomitrella patens estExt_fgenesh1_pg.C_3900014 N 0.843
e_gw1.0.323.1 Selaginella moellendorfii e_gw1.0.323.1 N 0.771
e_gw1.4.224.1 Physcomitrella patens e_gw1.4.224.1 N 0.857
e_gw1.77.52.1 Physcomitrella patens e_gw1.77.52.1 N 0.857
fgenesh1_pm.scaffold_57000010 Physcomitrella patens fgenesh1_pm.scaffold_57000010 N 0.829
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.914
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.829
fgeneshTA2_pg.C_scaffold_2000899 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000899 N 0.729
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.943
Glyma11g33670.1 Glycine max Glyma11g33670.1 N 0.700
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.943
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.943
Glyma18g04530.1 Glycine max Glyma18g04530.1 N 0.700
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.871
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.843
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.800
GSVIVG00016588001 Vitis vinifera GSVIVG00016588001 N 0.786
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.929
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.743
gw1.1.189.1 Selaginella moellendorfii gw1.1.189.1 N 0.714
LjSGA_065336.1 Lotus japonicus LjSGA_065336.1 N 0.729
LjT41B11.50.nd Lotus japonicus LjT41B11.50.nd N 0.757
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.843
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.786
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.829
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.857
MDP0000119945 Malus x domestica MDP0000119945 N 0.929
MDP0000153894 Malus x domestica MDP0000153894 N 0.929
MDP0000202749 Malus x domestica MDP0000202749 N 0.714
MDP0000251188 Malus x domestica MDP0000251188 N 0.929
MDP0000320467 Malus x domestica MDP0000320467 N 0.829
Medtr3g087640 Medicago truncatula Medtr3g087640 N 0.700
Medtr3g087650 Medicago truncatula Medtr3g087650 N 0.700
mgf000319m Mimulus guttatus mgf000319m N 0.700
mgf010207m Mimulus guttatus mgf010207m N 0.914
mgf013964m Mimulus guttatus mgf013964m N 0.743
PDK_20s1300711g001 Phoenix dactylifera PDK_20s1300711g001 N 0.700
PDK_20s130094197g001 Phoenix dactylifera PDK_20s130094197g001 N 0.700
PK16300.1 Cannabis sativa PK16300.1 N 0.729
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.843
B9HTL2_POPTR Populus trichocarpa POPTR_0010s21510 N 0.800
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.843
B9GUT0_POPTR Populus trichocarpa POPTR_0017s02890 N 0.729
ppa009623m Prunus persica ppa009623m N 0.714
ppa010358m Prunus persica ppa010358m N 0.957
ppa014850m Prunus persica ppa014850m N 0.729
SB01G039330 Sorghum bicolor Sb01g039330 N 0.857
SB07G020860 Sorghum bicolor Sb07g020860 N 0.800